Rapid and accurate taxonomic classification of insect (class Insecta) cytochromecoxidase subunit 1 (COI) DNA barcode sequences using a naïve Bayesian classifier

Amplicon pyrosequencing late Pleistocene permafrost: the removal of putative contaminant sequences and small-scale reproducibility

(2013) Teresita M. Porter et al.   Molecular Ecology Resources

Barcoding in the dark?: A critical view of the sufficiency of zoological DNA barcoding databases and a plea for broader integration of taxonomic knowledge

(2013) Sebastian Kvist   MOLECULAR PHYLOGENETICS AND EVOLUTION

Taxonomic Classification of Bacterial 16S rRNA Genes Using Short Sequencing Reads: Evaluation of Effective Study Designs

(2013) Orna Mizrahi-Man et al.   PLoS One

A brief introduction to web-based genome browsers

(2012) J. Wang et al.   BRIEFINGS IN BIOINFORMATICS

An update on DNA barcoding: low species coverage and numerous unidentified sequences

(2012) Shiyang Kwong et al.   CLADISTICS

Biomonitoring 2.0: a new paradigm in ecosystem assessment made possible by next-generation DNA sequencing

(2012) DONALD J. BAIRD et al.   MOLECULAR ECOLOGY

Multi-locus species delimitation in closely related animals and fungi: one marker is not enough

(2012) JULIAN R. DUPUIS et al.   MOLECULAR ECOLOGY

The effect of sampling from subdivided populations on species identification with DNA barcodes using a Bayesian statistical approach

(2012) Melanie Lou et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Identifying Insects with Incomplete DNA Barcode Libraries, African Fruit Flies (Diptera: Tephritidae) as a Test Case

(2012) Massimiliano Virgilio et al.   PLoS One

Using the RDP Classifier to Predict Taxonomic Novelty and Reduce the Search Space for Finding Novel Organisms

(2012) Yemin Lan et al.   PLoS One

Factors That Affect Large Subunit Ribosomal DNA Amplicon Sequencing Studies of Fungal Communities: Classification Method, Primer Choice, and Error

(2012) Teresita M. Porter et al.   PLoS One

The Effect of Geographical Scale of Sampling on DNA Barcoding

(2012) J. Bergsten et al.   SYSTEMATIC BIOLOGY

Assessing biodiversity of a freshwater benthic macroinvertebrate community through non-destructive environmental barcoding of DNA from preservative ethanol

(2012) Mehrdad Hajibabaei et al.   BMC ECOLOGY

Accurate, Rapid Taxonomic Classification of Fungal Large-Subunit rRNA Genes

(2011) Kuan-Liang Liu et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Integrative analysis of environmental sequences using MEGAN4

(2011) D. H. Huson et al.   GENOME RESEARCH

Impact of training sets on classification of high-throughput bacterial 16s rRNA gene surveys

(2011) Jeffrey J Werner et al.   ISME Journal

Discovering the Unknown: Improving Detection of Novel Species and Genera from Short Reads

(2011) Gail L. Rosen et al.   JOURNAL OF BIOMEDICINE AND BIOTECHNOLOGY

Are similarity- or phylogeny-based methods more appropriate for classifying internal transcribed spacer (ITS) metagenomic amplicons?

(2011) Teresita M. Porter et al.   NEW PHYTOLOGIST

Sympatry in Mantophasmatodea, with the description of a new species and phylogenetic considerations

(2011) Monika J. B. Eberhard et al.   ORGANISMS DIVERSITY & EVOLUTION

Environmental Barcoding: A Next-Generation Sequencing Approach for Biomonitoring Applications Using River Benthos

(2011) Mehrdad Hajibabaei et al.   PLoS One

Pyrosequencing for Mini-Barcoding of Fresh and Old Museum Specimens

(2011) Shadi Shokralla et al.   PLoS One

Higher-level phylogeny of the insect order Hemiptera: is Auchenorrhyncha really paraphyletic?

(2011) JASON R. CRYAN et al.   SYSTEMATIC ENTOMOLOGY

When species matches are unavailable are DNA barcodes correctly assigned to higher taxa? An assessment using sphingid moths

(2011) John Wilson et al.   BMC ECOLOGY

Progress in molecular and morphological taxon discovery in Fungi and options for formal classification of environmental sequences

(2011) David S. Hibbett et al.   Fungal Biology Reviews

Comparative performances of DNA barcoding across insect orders

(2010) Massimiliano Virgilio et al.   BMC BIOINFORMATICS

Performance of the COX1 gene as a marker for the study of metabolically active Pezizomycotina and Agaricomycetes fungal communities from the analysis of soil RNA

(2010) Coralie Damon et al.   FEMS MICROBIOLOGY ECOLOGY

Ultrasequencing of the meiofaunal biosphere: practice, pitfalls and promises

(2010) S. CREER et al.   MOLECULAR ECOLOGY

The genus Drosophila as a model for testing tree- and character-based methods of species identification using DNA barcoding

(2010) Amir Yassin et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Assigning sequences to species in the absence of large interspecific differences

(2010) Melanie Lou et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

On wings of lace: phylogeny and Bayesian divergence time estimates of Neuropterida (Insecta) based on morphological and molecular data

(2010) SHAUN L. WINTERTON et al.   SYSTEMATIC ENTOMOLOGY

DNA barcodes for 1/1000 of the animal kingdom

(2009) P. D. N. Hebert et al.   Biology Letters

Reconstructing the origins of praying mantises (Dictyoptera, Mantodea): the roles of Gondwanan vicariance and morphological convergence

(2009) Gavin J. Svenson et al.   CLADISTICS

DNA barcoding Central Asian butterflies: increasing geographical dimension does not significantly reduce the success of species identification

(2009) VLADIMIR A LUKHTANOV et al.   Molecular Ecology Resources

A universal DNA mini-barcode for biodiversity analysis

(2008) Isabelle Meusnier et al.   BMC GENOMICS

A molecular phylogeny of fleas (Insecta: Siphonaptera): origins and host associations

(2008) Michael F. Whiting et al.   CLADISTICS

Accurate taxonomy assignments from 16S rRNA sequences produced by highly parallel pyrosequencers

(2008) Z. Liu et al.   NUCLEIC ACIDS RESEARCH

Fast phylogenetic DNA barcoding

(2008) K. Munch et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

The Use of Mean Instead of Smallest Interspecific Distances Exaggerates the Size of the “Barcoding Gap” and Leads to Misidentification

(2008) Rudolf Meier et al.   SYSTEMATIC BIOLOGY