De novoassembly and comparative analysis of theCeratodon purpureustranscriptome

InterProScan 5: genome-scale protein function classification

(2014) P. Jones et al.   BIOINFORMATICS

Sailfish enables alignment-free isoform quantification from RNA-seq reads using lightweight algorithms

(2014) Rob Patro et al.   NATURE BIOTECHNOLOGY

Reannotation and extended community resources for the genome of the non-seed plant Physcomitrella patens provide insights into the evolution of plant gene structures and functions

(2013) Andreas D Zimmer et al.   BMC GENOMICS

Assessing De Novo transcriptome assembly metrics for consistency and utility

(2013) Shawn T O’Neil et al.   BMC GENOMICS

Evolutionary consequences of self-fertilization in plants

(2013) S. I. Wright et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

RECURRENT EVOLUTION OF DIOECY IN BRYOPHYTES

(2012) Stuart F. McDaniel et al.   EVOLUTION

Phylogeny of haplolepideous mosses — challenges and perspectives

(2012) Michael Stech et al.   JOURNAL OF BRYOLOGY

RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome

(2011) Bo Li et al.   BMC BIOINFORMATICS

Factors that Contribute to Variation in Evolutionary Rate among Arabidopsis Genes

(2011) L. Yang et al.   MOLECULAR BIOLOGY AND EVOLUTION

An experimental method to facilitate the identification of hybrid sporophytes in the moss Physcomitrella patens using fluorescent tagged lines

(2011) Pierre-François Perroud et al.   NEW PHYTOLOGIST

Dissecting Plant Genomes with the PLAZA Comparative Genomics Platform

(2011) M. Van Bel et al.   PLANT PHYSIOLOGY

REVIGO Summarizes and Visualizes Long Lists of Gene Ontology Terms

(2011) Fran Supek et al.   PLoS One

Are all sex chromosomes created equal?

(2011) Doris Bachtrog et al.   TRENDS IN GENETICS

Evolutionary crossroads in developmental biology: Physcomitrella patens

(2010) M. J. Prigge et al.   DEVELOPMENT

Patterns of Codon Usage Bias in Silene latifolia

(2010) S. Qiu et al.   MOLECULAR BIOLOGY AND EVOLUTION