Efficient development of highly polymorphic microsatellite markers based on polymorphic repeats in transcriptome sequences of multiple individuals

In-silicodetection of EST-SSR markers in threeBrassicaspecies and transferability inB. rapa

(2016) J. Y. Wang et al.   JOURNAL OF HORTICULTURAL SCIENCE & BIOTECHNOLOGY

The diploid origins of allopolyploid rose species studied using single nucleotide polymorphism haplotypes flanking a microsatellite repeat

(2016) J. Zhang et al.   JOURNAL OF HORTICULTURAL SCIENCE & BIOTECHNOLOGY

Biochemical systematic, population structure and genetic variability studies among Iranian Cucurbita (Cucurbita pepo L.) accessions, using genomic SSRs and implications for their breeding potential

(2013) Rahim Barzegar et al.   BIOCHEMICAL SYSTEMATICS AND ECOLOGY

Mediterranean Hedysarum phylogeny by transferable microsatellites from Medicago

(2013) Nadia Zitouna et al.   BIOCHEMICAL SYSTEMATICS AND ECOLOGY

Genetic structure and diversity of Portunus trituberculatus in Chinese population revealed by microsatellite markers

(2013) Enmian Guo et al.   BIOCHEMICAL SYSTEMATICS AND ECOLOGY

Characterization and gene mapping of a chlorophyll-deficient mutant clm1 of Triticum monococcum L.

(2013) M. J. Ansari et al.   BIOLOGIA PLANTARUM

Recent distribution changes affect geographic clines in genetic diversity and structure of Pinus densiflora natural populations in Japan

(2013) Masakazu G. Iwaizumi et al.   FOREST ECOLOGY AND MANAGEMENT

Efficient isolation of polymorphic microsatellites from high-throughput sequence data based on number of repeats

(2013) Sara D. Cardoso et al.   Marine Genomics

Predicting polymorphic EST-SSRsin silico

(2013) Chris Duran et al.   Molecular Ecology Resources

EST-SSR markers from five sequenced cDNA libraries of common bean (Phaseolus vulgarisL.) comparing three bioinformatic algorithms

(2013) Matthew W. Blair et al.   Molecular Ecology Resources

Stronger transferability but lower variability in transcriptomic- than in anonymous microsatellites: evidence from Hylid frogs

(2013) Christophe Dufresnes et al.   Molecular Ecology Resources

Inferring short tandem repeat variation from paired-end short reads

(2013) Minh Duc Cao et al.   NUCLEIC ACIDS RESEARCH

QualitySNPng: a user-friendly SNP detection and visualization tool

(2013) Harm Nijveen et al.   NUCLEIC ACIDS RESEARCH

Microsatellites for the Marsh Fritillary Butterfly: De Novo Transcriptome Sequencing, and a Comparison with Amplified Fragment Length Polymorphism (AFLP) Markers

(2013) Melanie R. Smee et al.   PLoS One

32 species validation of a new Illumina paired-end approach for the development of microsatellites

(2013) Stacey L. Lance et al.   PLoS One

Genetic structure and diversity analysis in Vitis vinifera L. cultivars from Iran using SSR markers

(2013) H. Doulati-Baneh et al.   SCIENTIA HORTICULTURAE

Genetic diversity and differentiation in roses: A garden rose perspective

(2013) M. Vukosavljev et al.   SCIENTIA HORTICULTURAE

Identification of high-resolution microsatellites withouta prioriknowledge of genotypes using a simple scoring approach

(2013) Erik Eschbach et al.   Methods in Ecology and Evolution

Generation and analysis of expressed sequence tags in the extreme large genomes Lilium and Tulipa

(2012) Arwa Shahin et al.   BMC GENOMICS

The development of EST-SSR markers in Lilium regale and their cross-amplification in related species

(2012) Suxia Yuan et al.   EUPHYTICA

Large-scale development of microsatellite markers inNicotiana tabacumand construction of a genetic map of flue-cured tobacco

(2012) Zhijun Tong et al.   PLANT BREEDING

Rapid Microsatellite Identification from Illumina Paired-End Genomic Sequencing in Two Birds and a Snake

(2012) Todd A. Castoe et al.   PLoS One

Isolation and characterization of EST-based microsatellite markers for Scatophagus argus based on transcriptome analysis

(2012) Huifen Liu et al.   Conservation Genetics Resources

Transcriptome sequencing of black grouse (Tetrao tetrix) for immune gene discovery and microsatellite development

(2012) B. Wang et al.   Open Biology

Quality control and preprocessing of metagenomic datasets

(2011) R. Schmieder et al.   BIOINFORMATICS

Transcriptome Sequencing of Hevea brasiliensis for Development of Microsatellite Markers and Construction of a Genetic Linkage Map

(2011) K. Triwitayakorn et al.   DNA RESEARCH

Multiplexed microsatellite recovery using massively parallel sequencing

(2011) T. N. JENNINGS et al.   Molecular Ecology Resources

Full-length transcriptome assembly from RNA-Seq data without a reference genome

(2011) Manfred G Grabherr et al.   NATURE BIOTECHNOLOGY

A Novel Approach for Mining Polymorphic Microsatellite Markers In Silico

(2011) Joseph I. Hoffman et al.   PLoS One

A fast and cost-effective approach to develop and map EST-SSR markers: oak as a case study

(2010) Jérôme Durand et al.   BMC GENOMICS

Rose (Rosa hybrida L.) EST-derived microsatellite markers and their transferability to strawberry (Fragaria spp.)

(2010) Young Hoon Park et al.   SCIENTIA HORTICULTURAE

Towards a unified genetic map for diploid roses

(2010) Monika Spiller et al.   THEORETICAL AND APPLIED GENETICS

Utility of EST-derived SSR in cultivated peanut (Arachis hypogaea L.) and Arachis wild species

(2009) Xuanqiang Liang et al.   BMC PLANT BIOLOGY

Development and characterization of microsatellite loci for Rosa odorata var. gigantea Rehder & E. H. Wilson (Rosaceae)

(2009) Jing Meng et al.   CONSERVATION GENETICS

Large-scale identification of polymorphic microsatellites using an in silico approach

(2008) Jifeng Tang et al.   BMC BIOINFORMATICS