QualitySNPng: a user-friendly SNP detection and visualization tool

Generation and analysis of expressed sequence tags in the extreme large genomes Lilium and Tulipa

(2012) Arwa Shahin et al.   BMC GENOMICS

Comparative next-generation mapping of the Phytophthora infestans resistance gene Rpi-dlc2 in a European accession of Solanum dulcamara

(2012) T. M. Golas et al.   THEORETICAL AND APPLIED GENETICS

Single nucleotide polymorphism discovery from expressed sequence tags in the waterflea Daphnia magna

(2011) Luisa Orsini et al.   BMC GENOMICS

Multiple reference genomes and transcriptomes for Arabidopsis thaliana

(2011) Xiangchao Gan et al.   NATURE

A framework for variation discovery and genotyping using next-generation DNA sequencing data

(2011) Mark A DePristo et al.   NATURE GENETICS

Genotype and SNP calling from next-generation sequencing data

(2011) Rasmus Nielsen et al.   NATURE REVIEWS GENETICS

Genome-wide genetic marker discovery and genotyping using next-generation sequencing

(2011) John W. Davey et al.   NATURE REVIEWS GENETICS

Transcriptome Sequencing and De Novo Analysis for Yesso Scallop (Patinopecten yessoensis) Using 454 GS FLX

(2011) Rui Hou et al.   PLoS One

A transcriptomic analysis of gene expression in the venom gland of the snake Bothrops alternatus (urutu)

(2010) Kiara C Cardoso et al.   BMC GENOMICS

A pipeline for high throughput detection and mapping of SNPs from EST databases

(2010) A. M. Anithakumari et al.   MOLECULAR BREEDING

Galaxy: a comprehensive approach for supporting accessible, reproducible, and transparent computational research in the life sciences

(2010) Jeremy Goecks et al.   GENOME BIOLOGY

VarScan: variant detection in massively parallel sequencing of individual and pooled samples

(2009) Daniel C. Koboldt et al.   BIOINFORMATICS

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

(2009) Ben Langmead et al.   GENOME BIOLOGY

Aggressive assembly of pyrosequencing reads with mates

(2008) Jason R. Miller et al.   BIOINFORMATICS

A Linkage Map of the Zebra Finch Taeniopygia guttata Provides New Insights Into Avian Genome Evolution

(2008) J. Stapley et al.   GENETICS