Inferences of genetic architecture of bill morphology in house sparrow using a high-density SNP array point to a polygenic basis

Inference of genetic architecture from chromosome partitioning analyses is sensitive to genome variation, sample size, heritability and effect size distribution

(2018) Petri Kemppainen et al.   Molecular Ecology Resources

Linkage disequilibrium clustering-based approach for association mapping with tightly linked genomewide data

(2018) Zitong Li et al.   Molecular Ecology Resources

Reversal of response to artificial selection on body size in a wild passerine

(2017) Thomas Kvalnes et al.   EVOLUTION

Insights into the genetic architecture of morphological traits in two passerine bird species

(2017) C N S Silva et al.   HEREDITY

Association mapping of morphological traits in wild and captive zebra finches: reliable within, but not between populations

(2017) Ulrich Knief et al.   MOLECULAR ECOLOGY

Recent natural selection causes adaptive evolution of an avian polygenic trait

(2017) Mirte Bosse et al.   SCIENCE

Genomic Quantitative Genetics to Study Evolution in the Wild

(2017) Phillip Gienapp et al.   TRENDS IN ECOLOGY & EVOLUTION

The genomic mosaicism of hybrid speciation

(2017) Tore O. Elgvin et al.   Science Advances

Transitions between phases of genomic differentiation during stick-insect speciation

(2017) Rüdiger Riesch et al.   Nature Ecology & Evolution

EigenGWAS: finding loci under selection through genome-wide association studies of eigenvectors in structured populations

(2016) G-B Chen et al.   HEREDITY

Genomic variation at the tips of the adaptive radiation of Darwin's finches

(2016) Jaime A. Chaves et al.   MOLECULAR ECOLOGY

Inbreeding depression across the lifespan in a wild mammal population

(2016) Jisca Huisman et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A beak size locus in Darwins finches facilitated character displacement during a drought

(2016) S. Lamichhaney et al.   SCIENCE

A multi-marker association method for genome-wide association studies without the need for population structure correction

(2016) Jonas R. Klasen et al.   Nature Communications

Increasing the power of genome wide association studies in natural populations using repeated measures - evaluation and implementation

(2016) Lars Rönnegård et al.   Methods in Ecology and Evolution

Alleles versus mutations: Understanding the evolution of genetic architecture requires a molecular perspective on allelic origins

(2015) David L. Remington   EVOLUTION

Replicated analysis of the genetic architecture of quantitative traits in two wild great tit populations

(2015) Anna W. Santure et al.   MOLECULAR ECOLOGY

Whole-genome resequencing of extreme phenotypes in collared flycatchers highlights the difficulty of detecting quantitative trait loci in natural populations

(2015) Marty Kardos et al.   Molecular Ecology Resources

Evolution of Darwin’s finches and their beaks revealed by genome sequencing

(2015) Sangeet Lamichhaney et al.   NATURE

Sex-dependent dominance at a single locus maintains variation in age at maturity in salmon

(2015) Nicola J. Barson et al.   NATURE

Ensembl 2016

(2015) Andrew Yates et al.   NUCLEIC ACIDS RESEARCH

Genome-wide association mapping in a wild avian population identifies a link between genetic and phenotypic variation in a life-history trait

(2015) A. Husby et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

LinkImpute: Fast and Accurate Genotype Imputation for Nonmodel Organisms

(2015) Daniel Money et al.   G3-Genes Genomes Genetics

Is Beak Morphology in Darwin’s Finches Tuned to Loading Demands?

(2015) Joris Soons et al.   PLoS One

Genome-Wide Association Mapping of Phenotypic Traits Subject to a Range of Intensities of Natural Selection in Timema cristinae

(2014) Aaron A. Comeault et al.   AMERICAN NATURALIST

Challenges and prospects in genome-wide quantitative trait loci mapping of standing genetic variation in natural populations

(2014) Holger Schielzeth et al.   Annals of the New York Academy of Sciences

An intragenic deletion of the NFIA gene in a patient with a hypoplastic corpus callosum, craniofacial abnormalities and urinary tract defects

(2014) Anupam Rao et al.   European Journal of Medical Genetics

Epigenetics and the Evolution of Darwin’s Finches

(2014) Michael K. Skinner et al.   Genome Biology and Evolution

Comparison of promoter DNA methylation and expression levels of genes encoding CCAAT/enhancer binding proteins in AML patients

(2014) Ewa Musialik et al.   LEUKEMIA RESEARCH

Genome-wide SNP analysis reveals a genetic basis for sea-age variation in a wild population of Atlantic salmon (Salmo salar)

(2014) Susan E. Johnston et al.   MOLECULAR ECOLOGY

Estimating quantitative genetic parameters in wild populations: a comparison of pedigree and genomic approaches

(2014) Camillo Bérénos et al.   MOLECULAR ECOLOGY

Effects of population characteristics and structure on estimates of effective population size in a house sparrow metapopulation

(2014) Helle Tessand Baalsrud et al.   MOLECULAR ECOLOGY

A high-density linkage map enables a second-generation collared flycatcher genome assembly and reveals the patterns of avian recombination rate variation and chromosomal evolution

(2014) Takeshi Kawakami et al.   MOLECULAR ECOLOGY

Estimation of linkage disequilibrium and interspecific gene flow inFicedulaflycatchers by a newly developed 50k single-nucleotide polymorphism array

(2014) Takeshi Kawakami et al.   Molecular Ecology Resources

Advances and limits of using population genetics to understand local adaptation

(2014) Peter Tiffin et al.   TRENDS IN ECOLOGY & EVOLUTION

Comparison of Methods to Account for Relatedness in Genome-Wide Association Studies with Family-Based Data

(2014) Jakris Eu-ahsunthornwattana et al.   PLoS Genetics

eXclusion: Toward Integrating the X Chromosome in Genome-wide Association Analyses

(2013) Anastasia L. Wise et al.   AMERICAN JOURNAL OF HUMAN GENETICS

Beak and skull shapes of human commensal and non-commensal house sparrows Passer domesticus

(2013) Sepand Riyahi et al.   BMC EVOLUTIONARY BIOLOGY

Improved estimation of inbreeding and kinship in pigs using optimized SNP panels

(2013) Marcos S Lopes et al.   BMC GENETICS

Genomic dissection of variation in clutch size and egg mass in a wild great tit (Parus major) population

(2013) Anna W. Santure et al.   MOLECULAR ECOLOGY

The easy road to genome-wide medium density SNP screening in a non-model species: development and application of a 10 K SNP-chip for the house sparrow (Passer domesticus)

(2013) Ingerid J. Hagen et al.   Molecular Ecology Resources

Life history trade-offs at a single locus maintain sexually selected genetic variation

(2013) Susan E. Johnston et al.   NATURE

Genomic rearrangements and the evolution of clusters of locally adaptive loci

(2013) S. Yeaman   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Polygenic Modeling with Bayesian Sparse Linear Mixed Models

(2013) Xiang Zhou et al.   PLoS Genetics

Improved Heritability Estimation from Genome-wide SNPs

(2012) Doug Speed et al.   AMERICAN JOURNAL OF HUMAN GENETICS

Fibroblast growth factor and bone morphogenetic protein signaling are required for specifying prechondrogenic identity in neural crest-derived mesenchyme and initiating the chondrogenic program

(2012) Megha Kumar et al.   DEVELOPMENTAL DYNAMICS

A Critical Assessment of Storytelling: Gene Ontology Categories and the Importance of Validating Genomic Scans

(2012) Pavlos Pavlidis et al.   MOLECULAR BIOLOGY AND EVOLUTION

Evidence of inbreeding depression but not inbreeding avoidance in a natural house sparrow population

(2012) ANNA M. BILLING et al.   MOLECULAR ECOLOGY

Genome-wide efficient mixed-model analysis for association studies

(2012) Xiang Zhou et al.   NATURE GENETICS

Genomic inflation factors under polygenic inheritance

(2011) Jian Yang et al.   EUROPEAN JOURNAL OF HUMAN GENETICS

Genome-wide association mapping identifies the genetic basis of discrete and quantitative variation in sexual weaponry in a wild sheep population

(2011) SUSAN E. JOHNSTON et al.   MOLECULAR ECOLOGY

Two developmental modules establish 3D beak-shape variation in Darwin's finches

(2011) R. Mallarino et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

GCTA: A Tool for Genome-wide Complex Trait Analysis

(2010) Jian Yang et al.   AMERICAN JOURNAL OF HUMAN GENETICS

On the use of large marker panels to estimate inbreeding and relatedness: empirical and simulation studies of a pedigreed zebra finch population typed at 771 SNPs

(2010) ANNA W. SANTURE et al.   MOLECULAR ECOLOGY

Adaptation – not by sweeps alone

(2010) Jonathan K. Pritchard et al.   NATURE REVIEWS GENETICS

Adaptation genomics: the next generation

(2010) Jessica Stapley et al.   TRENDS IN ECOLOGY & EVOLUTION

Individuals and populations: the role of long-term, individual-based studies of animals in ecology and evolutionary biology

(2010) Tim Clutton-Brock et al.   TRENDS IN ECOLOGY & EVOLUTION

Genome mapping in intensively studied wild vertebrate populations

(2010) Jon Slate et al.   TRENDS IN GENETICS

Effect of flower shape and size on foraging performance and trade-offs in a tropical hummingbird

(2009) Ethan J. Temeles et al.   ECOLOGY

Is there still a need for candidate gene approaches in the era of genome-wide association studies?

(2009) Stefan Wilkening et al.   GENOMICS

Extensive linkage disequilibrium in a wild bird population

(2009) M H Li et al.   HEREDITY

Comparative gene expression analysis of avian embryonic facial structures reveals new candidates for human craniofacial disorders

(2009) S.A. Brugmann et al.   HUMAN MOLECULAR GENETICS

Sex-specific fitness correlates of dispersal in a house sparrow metapopulation

(2009) Henrik Pärn et al.   JOURNAL OF ANIMAL ECOLOGY

The genetics of quantitative traits: challenges and prospects

(2009) Trudy F. C. Mackay et al.   NATURE REVIEWS GENETICS

Adaptive Evolution of Pelvic Reduction in Sticklebacks by Recurrent Deletion of a Pitx1 Enhancer

(2009) Y. F. Chan et al.   SCIENCE

Delineation of the proximal 3q microdeletion syndrome

(2008) Marcia J. Simovich et al.   AMERICAN JOURNAL OF MEDICAL GENETICS PART A

EVOLUTIONARY DYNAMICS OF A SEXUAL ORNAMENT IN THE HOUSE SPARROW (PASSER DOMESTICUS): THE ROLE OF INDIRECT SELECTION WITHIN AND BETWEEN SEXES

(2008) Henrik Jensen et al.   EVOLUTION

Reproductive success and individual variation in feeding frequency of House Sparrows (Passer domesticus)

(2008) Thor H. Ringsby et al.   JOURNAL OF ORNITHOLOGY

Heritability in the genomics era — concepts and misconceptions

(2008) Peter M. Visscher et al.   NATURE REVIEWS GENETICS