Testing hypotheses of mitochondrial gene-tree paraphyly: unravelling mitochondrial capture of the Streak-breasted Scimitar Babbler (Pomatorhinus ruficollis) by the Taiwan Scimitar Babbler (Pomatorhinus musicus)

Model choice for phylogeographic inference using a large set of models

(2014) Tara A. Pelletier et al.   MOLECULAR ECOLOGY

All models are wrong

(2014) Michael J. Hickerson   MOLECULAR ECOLOGY

TESTING MITOCHONDRIAL CAPTURE AND DEEP COALESCENCE IN AMAZONIAN CICHLID FISHES (CICHLIDAE:CICHLA)

(2013) Stuart C. Willis et al.   EVOLUTION

RECOMMENDATIONS FOR USING MSBAYES TO INCORPORATE UNCERTAINTY IN SELECTING AN ABC MODEL PRIOR: A RESPONSE TO OAKS ET AL.

(2013) Michael J. Hickerson et al.   EVOLUTION

MIGRATION, MITOCHONDRIA, AND THE YELLOW-RUMPED WARBLER

(2013) David P. L. Toews et al.   EVOLUTION

MEGA6: Molecular Evolutionary Genetics Analysis Version 6.0

(2013) Koichiro Tamura et al.   MOLECULAR BIOLOGY AND EVOLUTION

Model selection as a tool for phylogeographic inference: an example from the willowSalix melanopsis

(2013) Bryan C. Carstens et al.   MOLECULAR ECOLOGY

Evaluating summary statistics used to test for incomplete lineage sorting: mito-nuclear discordance in the reef spongeCallyspongia vaginalis

(2013) Melissa B. DeBiasse et al.   MOLECULAR ECOLOGY

Barcoding in the dark?: A critical view of the sufficiency of zoological DNA barcoding databases and a plea for broader integration of taxonomic knowledge

(2013) Sebastian Kvist   MOLECULAR PHYLOGENETICS AND EVOLUTION

Molecular systematics and plumage coloration evolution of an enigmatic babbler (Pomatorhinus ruficollis) in East Asia

(2013) Feng Dong et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Mitochondrial Capture Misleads about Ecological Speciation in the Daphnia pulex Complex

(2013) Silvia Marková et al.   PLoS One

Coalescent Species Delimitation in Milksnakes (Genus Lampropeltis) and Impacts on Phylogenetic Comparative Analyses

(2013) S. Ruane et al.   SYSTEMATIC BIOLOGY

Poor Fit to the Multispecies Coalescent is Widely Detectable in Empirical Data

(2013) Noah M. Reid et al.   SYSTEMATIC BIOLOGY

Heritable genome-wide variation of gene expression and promoter methylation between wild and domesticated chickens

(2012) Daniel Nätt et al.   BMC GENOMICS

EVIDENCE FOR CLIMATE-DRIVEN DIVERSIFICATION? A CAUTION FOR INTERPRETING ABC INFERENCES OF SIMULTANEOUS HISTORICAL EVENTS

(2012) Jamie R. Oaks et al.   EVOLUTION

LOCAL ADAPTATION AND THE EVOLUTION OF PHENOTYPIC PLASTICITY IN TRINIDADIAN GUPPIES (POECILIA RETICULATA)

(2012) Julián Torres-Dowdall et al.   EVOLUTION

Bayesian Phylogenetics with BEAUti and the BEAST 1.7

(2012) Alexei J. Drummond et al.   MOLECULAR BIOLOGY AND EVOLUTION

The biogeography of mitochondrial and nuclear discordance in animals

(2012) DAVID P. L. TOEWS et al.   MOLECULAR ECOLOGY

Nuclear Genomic Sequences Reveal that Polar Bears Are an Old and Distinct Bear Lineage

(2012) F. Hailer et al.   SCIENCE

Mitochondrial capture and incomplete lineage sorting in the diversification of balitorine loaches (Cypriniformes, Balitoridae) revealed by mitochondrial and nuclear genes

(2012) Qiong-Ying Tang et al.   ZOOLOGICA SCRIPTA

abc: an R package for approximate Bayesian computation (ABC)

(2012) Katalin Csilléry et al.   Methods in Ecology and Evolution

Systematics of the scimitar babblers (Pomatorhinus: Timaliidae): phylogeny, biogeography, and species-limits of four species complexes

(2011) SUSHMA REDDY et al.   BIOLOGICAL JOURNAL OF THE LINNEAN SOCIETY

Evolution of adaptive phenotypic traits without positive Darwinian selection

(2011) A L Hughes   HEREDITY

Repeated Unidirectional Introgression of Nuclear and Mitochondrial DNA Between Four Congeneric Tanganyikan Cichlids

(2011) Bruno Nevado et al.   MOLECULAR BIOLOGY AND EVOLUTION

Genetic differentiation among populations of a Hispaniolan trunk anole that exhibit geographical variation in dewlap colour

(2011) JULIENNE NG et al.   MOLECULAR ECOLOGY

JML: testing hybridization from species trees

(2011) SIMON JOLY   Molecular Ecology Resources

Lack of confidence in approximate Bayesian computation model choice

(2011) C. P. Robert et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Molecular and morphological evidences reveal a cryptic species in the Vinaceous Rosefinch Carpodacus vinaceus (Fringillidae; Aves)

(2011) Hsu-Chun Wu et al.   ZOOLOGICA SCRIPTA

Evaluating the Roles of Energetic Functional Constraints on Teleost Mitochondrial-Encoded Protein Evolution

(2010) Yan-Bo Sun et al.   MOLECULAR BIOLOGY AND EVOLUTION

Bayesian Inference of the Demographic History of Chimpanzees

(2010) D. Wegmann et al.   MOLECULAR BIOLOGY AND EVOLUTION

Inter-specific gene flow dynamics during the Pleistocene-dated speciation of forest-dependent mosquitoes in Southeast Asia

(2010) KATY MORGAN et al.   MOLECULAR ECOLOGY

Rejecting strictly allopatric speciation on a continental island: prolonged postdivergence gene flow between Taiwan (Leucodioptron taewanus, Passeriformes Timaliidae) and Chinese (L. canorum canorum) hwameis

(2010) JING-WEN LI et al.   MOLECULAR ECOLOGY

msABC: a modification of Hudson’s ms to facilitate multi-locus ABC analysis

(2010) P. PAVLIDIS et al.   Molecular Ecology Resources

Molecular systematics and diversification of the Asian scimitar babblers (Timaliidae, Aves) based on mitochondrial and nuclear DNA sequences

(2010) Feng Dong et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

New Algorithms and Methods to Estimate Maximum-Likelihood Phylogenies: Assessing the Performance of PhyML 3.0

(2010) Stéphane Guindon et al.   SYSTEMATIC BIOLOGY

A Statistical Approach for Distinguishing Hybridization and Incomplete Lineage Sorting

(2009) Simon Joly et al.   AMERICAN NATURALIST

Mitochondrial introgression and replacement between yellowhammers (Emberiza citrinella) and pine buntings (Emberiza leucocephalos) (Aves: Passeriformes)

(2009) DARREN E. IRWIN et al.   BIOLOGICAL JOURNAL OF THE LINNEAN SOCIETY

THE SPECIATION HISTORY OF THEPHYSCOMITRIUM-PHYSCOMITRELLASPECIES COMPLEX

(2009) Stuart F. McDaniel et al.   EVOLUTION

Bayesian Computation and Model Selection Without Likelihoods

(2009) C. Leuenberger et al.   GENETICS

Efficient Approximate Bayesian Computation Coupled With Markov Chain Monte Carlo Without Likelihood

(2009) Daniel Wegmann et al.   GENETICS

Isolation with Migration Models for More Than Two Populations

(2009) Jody Hey   MOLECULAR BIOLOGY AND EVOLUTION

Bayesian Inference of Species Trees from Multilocus Data

(2009) J. Heled et al.   MOLECULAR BIOLOGY AND EVOLUTION

Looking forwards or looking backwards in avian phylogeography? A comment on Zink and Barrowclough 2008

(2009) SCOTT EDWARDS et al.   MOLECULAR ECOLOGY

Sailing through the Late Pleistocene: unusual historical demography of an East Asian endemic, the Chinese Hwamei (Leucodioptron canorum canorum), during the last glacial period

(2009) SHOU-HSIEN LI et al.   MOLECULAR ECOLOGY

The causes of mitochondrial DNA gene tree paraphyly in birds

(2009) Bailey D. McKay et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Refugia revisited: individualistic responses of species in space and time

(2009) J. R. Stewart et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Non-linear regression models for Approximate Bayesian Computation

(2009) Michael G. B. Blum et al.   STATISTICS AND COMPUTING

Gene tree discordance, phylogenetic inference and the multispecies coalescent

(2009) James H. Degnan et al.   TRENDS IN ECOLOGY & EVOLUTION

Gene flow and species delimitation

(2009) Rémy J. Petit et al.   TRENDS IN ECOLOGY & EVOLUTION

Using supernetworks to distinguish hybridization from lineage-sorting

(2008) Barbara R Holland et al.   BMC EVOLUTIONARY BIOLOGY

The adaptive evolution of the mammalian mitochondrial genome

(2008) Rute R da Fonseca et al.   BMC GENOMICS

jModelTest: Phylogenetic Model Averaging

(2008) D. Posada   MOLECULAR BIOLOGY AND EVOLUTION

Mitochondrial DNA under siege in avian phylogeography

(2008) ROBERT M. ZINK et al.   MOLECULAR ECOLOGY

Detecting hybrid speciation in the presence of incomplete lineage sorting using gene tree incongruence: A model

(2008) Chen Meng et al.   THEORETICAL POPULATION BIOLOGY

Evolutionary implications of non-neutral mitochondrial genetic variation

(2008) D DOWLING et al.   TRENDS IN ECOLOGY & EVOLUTION