Integration of biological data by kernels on graph nodes allows prediction of new genes involved in mitotic chromosome condensation

Nuclear RNA surveillance: role of TRAMP in controlling exosome specificity

(2013) Karyn Schmidt et al.   Wiley Interdisciplinary Reviews-RNA

Mitotic lamin disassembly is triggered by lipid-mediated signaling

(2012) Moritz Mall et al.   JOURNAL OF CELL BIOLOGY

Quantitative Analysis of Chromosome Condensation in Fission Yeast

(2012) B. Petrova et al.   MOLECULAR AND CELLULAR BIOLOGY

NIH Image to ImageJ: 25 years of image analysis

(2012) Caroline A Schneider et al.   NATURE METHODS

Uncovering the Molecular Machinery of the Human Spindle—An Integration of Wet and Dry Systems Biology

(2012) Ana M. Rojas et al.   PLoS One

Genome-wide siRNA screen for mediators of NF- B activation

(2012) B. E. Gewurz et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

False negative rates in Drosophila cell-based RNAi screens: a case study

(2011) Matthew Booker et al.   BMC GENOMICS

Mutations in Traf3ip1 reveal defects in ciliogenesis, embryonic development, and altered cell size regulation

(2011) Nicolas F. Berbari et al.   DEVELOPMENTAL BIOLOGY

The initial phase of chromosome condensation requires Cdk1-mediated phosphorylation of the CAP-D3 subunit of condensin II

(2011) S. Abe et al.   GENES & DEVELOPMENT

MCPH1 regulates chromosome condensation and shaping as a composite modulator of condensin II

(2011) Daisuke Yamashita et al.   JOURNAL OF CELL BIOLOGY

MIP-T3 Is a Negative Regulator of Innate Type I IFN Response

(2011) M.-H. J. Ng et al.   JOURNAL OF IMMUNOLOGY

53BP1 nuclear bodies form around DNA lesions generated by mitotic transmission of chromosomes under replication stress

(2011) Claudia Lukas et al.   NATURE CELL BIOLOGY

The Impact of Multifunctional Genes on "Guilt by Association" Analysis

(2011) Jesse Gillis et al.   PLoS One

Deciphering condensin action during chromosome segregation

(2011) Sara Cuylen et al.   TRENDS IN CELL BIOLOGY

Vigilance and Validation: Keys to Success in RNAi Screening

(2010) Frederic D. Sigoillot et al.   ACS Chemical Biology

Fast integration of heterogeneous data sources for predicting gene function with limited annotation

(2010) Sara Mostafavi et al.   BIOINFORMATICS

L2-norm multiple kernel learning and its application to biomedical data fusion

(2010) Shi Yu et al.   BMC BIOINFORMATICS

A guide to web tools to prioritize candidate genes

(2010) L.-C. Tranchevent et al.   BRIEFINGS IN BIOINFORMATICS

Condensins Promote Chromosome Recoiling during Early Anaphase to Complete Sister Chromatid Separation

(2010) Matthew J. Renshaw et al.   DEVELOPMENTAL CELL

The protein phosphatase 1 regulator PNUTS is a new component of the DNA damage response

(2010) Helga B Landsverk et al.   EMBO REPORTS

It's the machine that matters: Predicting gene function and phenotype from protein networks

(2010) Peggy I. Wang et al.   Journal of Proteomics

Phenotypic profiling of the human genome by time-lapse microscopy reveals cell division genes

(2010) Beate Neumann et al.   NATURE

CellCognition: time-resolved phenotype annotation in high-throughput live cell imaging

(2010) Michael Held et al.   NATURE METHODS

Assessment of protein domain fusions in human protein interaction networks prediction: Application to the human kinetochore model

(2010) Ian Morilla et al.   New Biotechnology

CODA: Accurate Detection of Functional Associations between Proteins in Eukaryotic Genomes Using Domain Fusion

(2010) Adam J. Reid et al.   PLoS One

A Genome-Scale DNA Repair RNAi Screen Identifies SPG48 as a Novel Gene Associated with Hereditary Spastic Paraplegia

(2010) Mikołaj Słabicki et al.   PLOS BIOLOGY

Mining for coexpression across hundreds of datasets using novel rank aggregation and visualization methods

(2009) Priit Adler et al.   GENOME BIOLOGY

Parallel RNAi screens across different cell lines identify generic and cell type-specific regulators of actin organization and cell morphology

(2009) Tao Liu et al.   GENOME BIOLOGY

iRefIndex: A consolidated protein interaction database with provenance

(2008) Sabry Razick et al.   BMC BIOINFORMATICS

Kid-Mediated Chromosome Compaction Ensures Proper Nuclear Envelope Formation

(2008) Miho Ohsugi et al.   CELL

Finding friends and enemies in an enemies-only network: A graph diffusion kernel for predicting novel genetic interactions and co-complex membership from yeast genetic interactions

(2008) Y. Qi et al.   GENOME RESEARCH

Microcephalin/MCPH1 Associates with the Condensin II Complex to Function in Homologous Recombination Repair

(2008) Jamie L. Wood et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

A single gene network accurately predicts phenotypic effects of gene perturbation in Caenorhabditis elegans

(2008) Insuk Lee et al.   NATURE GENETICS

A critical assessment of Mus musculus gene function prediction using integrated genomic evidence

(2008) Lourdes Peña-Castillo et al.   GENOME BIOLOGY

GeneMANIA: a real-time multiple association network integration algorithm for predicting gene function

(2008) Sara Mostafavi et al.   GENOME BIOLOGY

Spanning forests and the golden ratio

(2007) Pavel Chebotarev   DISCRETE APPLIED MATHEMATICS