Illuminating the Base of the Annelid Tree Using Transcriptomics

Unusual Development of the Mitraria Larva in the Polychaete Owenia collaris

(2016) Tracey I. Smart et al.   BIOLOGICAL BULLETIN

Phylogenomics of Annelida revisited: a cladistic approach using genome-wide expressed sequence tag data mining and examining the effects of missing data

(2013) Sebastian Kvist et al.   CLADISTICS

BaCoCa – A heuristic software tool for the parallel assessment of sequence biases in hundreds of gene and taxon partitions

(2013) Patrick Kück et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

The Impact of Paralogy on Phylogenomic Studies – A Case Study on Annelid Relationships

(2013) Torsten H. Struck   PLoS One

Oases: robust de novo RNA-seq assembly across the dynamic range of expression levels

(2012) Marcel H. Schulz et al.   BIOINFORMATICS

Reconstructing the ancestral annelid

(2012) Danny Eibye-Jacobsen et al.   JOURNAL OF ZOOLOGICAL SYSTEMATICS AND EVOLUTIONARY RESEARCH

Deep sequencing of small RNAs confirms an annelid affinity of Myzostomida

(2012) Conrad Helm et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Exploiting Gene Families for Phylogenomic Analysis of Myzostomid Transcriptome Data

(2012) Stefanie Hartmann et al.   PLoS One

Phylogeny of Oweniidae (Polychaeta) based on morphological data and taxonomic revision of Australian fauna

(2012) MARIA CAPA et al.   ZOOLOGICAL JOURNAL OF THE LINNEAN SOCIETY

An Early Cambrian stem polychaete with pygidial cirri

(2011) J. Vinther et al.   Biology Letters

Detecting the symplesiomorphy trap: a multigene phylogenetic analysis of terebelliform annelids

(2011) Min Zhong et al.   BMC EVOLUTIONARY BIOLOGY

Hyolithellus in life position from the Lower Cambrian of North Greenland

(2011) Christian B. Skovsted et al.   JOURNAL OF PALEONTOLOGY

Direction of evolution within Annelida and the definition of Pleistoannelida

(2011) Torsten H. Struck   JOURNAL OF ZOOLOGICAL SYSTEMATICS AND EVOLUTIONARY RESEARCH

Resolving the evolutionary relationships of molluscs with phylogenomic tools

(2011) Stephen A. Smith et al.   NATURE

Phylogenomic analyses unravel annelid evolution

(2011) Torsten H. Struck et al.   NATURE

Double indexing overcomes inaccuracies in multiplex sequencing on the Illumina platform

(2011) Martin Kircher et al.   NUCLEIC ACIDS RESEARCH

The Earliest Annelids: Lower Cambrian Polychaetes from the Sirius Passet Lagerstätte, Peary Land, North Greenland

(2010) Simon Conway Morris et al.   ACTA PALAEONTOLOGICA POLONICA

Monociliated epidermal cells in Gastrotricha: Significance for concepts of early metazoan evolution

(2010) R. M. Rieger   JOURNAL OF ZOOLOGICAL SYSTEMATICS AND EVOLUTIONARY RESEARCH

Phylogeny of Annelida (Lophotrochozoa): total-evidence analysis of morphology and six genes

(2009) Jan Zrzavý et al.   BMC EVOLUTIONARY BIOLOGY

On the phylogenetic position of Myzostomida: Can 77 genes get it wrong?

(2009) Christoph Bleidorn et al.   BMC EVOLUTIONARY BIOLOGY

HaMStR: Profile hidden markov model based search for orthologs in ESTs

(2009) Ingo Ebersberger et al.   BMC EVOLUTIONARY BIOLOGY

Mitochondrial genome sequence and gene order of Sipunculus nudus give additional support for an inclusion of Sipuncula into Annelida

(2009) Adina Mwinyi et al.   BMC GENOMICS

MicroRNAs resolve an apparent conflict between annelid systematics and their fossil record

(2009) E. A. Sperling et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Improved base calling for the Illumina Genome Analyzer using machine learning strategies

(2009) Martin Kircher et al.   GENOME BIOLOGY

Phyutility: a phyloinformatics tool for trees, alignments and molecular data

(2008) S. A. Smith et al.   BIOINFORMATICS

Using ESTs for phylogenomics: can one accurately infer a phylogenetic tree from a gappy alignment?

(2008) Stefanie Hartmann et al.   BMC EVOLUTIONARY BIOLOGY

Segmental Mode of Neural Patterning in Sipuncula

(2008) Alen Kristof et al.   CURRENT BIOLOGY

Velvet: Algorithms for de novo short read assembly using de Bruijn graphs

(2008) D. R. Zerbino et al.   GENOME RESEARCH

Detecting possibly saturated positions in 18S and 28S sequences and their influence on phylogenetic reconstruction of Annelida (Lophotrochozoa)

(2008) Torsten H. Struck et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Mechanism of phototaxis in marine zooplankton

(2008) Gáspár Jékely et al.   NATURE