Increased Genome Sampling Reveals a Dynamic Relationship between Gene Duplicability and the Structure of the Primate Protein–Protein Interaction Network

High Spontaneous Rate of Gene Duplication in Caenorhabditis elegans

(2011) Kendra J. Lipinski et al.   CURRENT BIOLOGY

The Human Genome Retains Relics of Its Prokaryotic Ancestry: Human Genes of Archaebacterial and Eubacterial Origin Exhibit Remarkable Differences

(2011) David Alvarez-Ponce et al.   Genome Biology and Evolution

Protein coadaptation and the design of novel approaches to identify protein-protein interactions

(2011) Mario A. Fares et al.   IUBMB LIFE

Network-Level and Population Genetics Analysis of the Insulin/TOR Signal Transduction Pathway Across Human Populations

(2011) P. Luisi et al.   MOLECULAR BIOLOGY AND EVOLUTION

Molecular Population Genetics of the Insulin/TOR Signal Transduction Pathway: A Network-Level Analysis in Drosophila melanogaster

(2011) D. Alvarez-Ponce et al.   MOLECULAR BIOLOGY AND EVOLUTION

TreeKO: a duplication-aware algorithm for the comparison of phylogenetic trees

(2011) Marina Marcet-Houben et al.   NUCLEIC ACIDS RESEARCH

Modification of Gene Duplicability during the Evolution of Protein Interaction Network

(2011) Matteo D'Antonio et al.   PLoS Computational Biology

Trees on networks: resolving statistical patterns of phylogenetic similarities among interacting proteins

(2010) William P Kelly et al.   BMC BIOINFORMATICS

ETE: a python Environment for Tree Exploration

(2010) Jaime Huerta-Cepas et al.   BMC BIOINFORMATICS

Comparative Genomics of the Vertebrate Insulin/TOR Signal Transduction Pathway: A Network-Level Analysis of Selective Pressures

(2010) David Alvarez-Ponce et al.   Genome Biology and Evolution

Microevolution of intermediary metabolism: evolutionary genetics meets metabolic biochemistry

(2010) A. J. Zera   JOURNAL OF EXPERIMENTAL BIOLOGY

Molecular population genetics and selection in the glycolytic pathway

(2010) W. F. Eanes   JOURNAL OF EXPERIMENTAL BIOLOGY

A Bayesian Approach for Fast and Accurate Gene Tree Reconstruction

(2010) M. D. Rasmussen et al.   MOLECULAR BIOLOGY AND EVOLUTION

An Integrated View of Molecular Coevolution in Protein-Protein Interactions

(2010) S. C. Lovell et al.   MOLECULAR BIOLOGY AND EVOLUTION

Ensembl 2011

(2010) P. Flicek et al.   NUCLEIC ACIDS RESEARCH

The BioGRID Interaction Database: 2011 update

(2010) C. Stark et al.   NUCLEIC ACIDS RESEARCH

TranslatorX: multiple alignment of nucleotide sequences guided by amino acid translations

(2010) Federico Abascal et al.   NUCLEIC ACIDS RESEARCH

Ohnologs in the human genome are dosage balanced and frequently associated with disease

(2010) T. Makino et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The life and death of gene families

(2009) Jeffery P. Demuth et al.   BIOESSAYS

Network-level molecular evolutionary analysis of the insulin/TOR signal transduction pathway across 12 Drosophila genomes

(2009) D. Alvarez-Ponce et al.   GENOME RESEARCH

A burst of segmental duplications in the genome of the African great ape ancestor

(2009) Tomas Marques-Bonet et al.   NATURE

The complex relationship of gene duplication and essentiality

(2009) Takashi Makino et al.   TRENDS IN GENETICS

Interacting Gene Clusters and the Evolution of the Vertebrate Immune System

(2008) T. Makino et al.   MOLECULAR BIOLOGY AND EVOLUTION

Large-scale assignment of orthology: back to phylogenetics?

(2008) Toni Gabaldón   GENOME BIOLOGY