An Integrated View of Molecular Coevolution in Protein-Protein Interactions

Environment-specific amino acid substitution tables: Tertiary templates and prediction of protein folds

(2010) John Overington et al.   PROTEIN SCIENCE

Protein Sectors: Evolutionary Units of Three-Dimensional Structure

(2009) Najeeb Halabi et al.   CELL

A Complex-based Reconstruction of theSaccharomyces cerevisiaeInteractome

(2009) Haidong Wang et al.   MOLECULAR & CELLULAR PROTEOMICS

The Effect of Sequence Evolution on Protein Structural Divergence

(2009) Simon G. Williams et al.   MOLECULAR BIOLOGY AND EVOLUTION

Predicting protein–protein interactions in the context of protein evolution

(2009) Anna C. F. Lewis et al.   Molecular BioSystems

Enhancing the prediction of protein pairings between interacting families using orthology information

(2008) Jose MG Izarzugaza et al.   BMC BIOINFORMATICS

Protein co-evolution, co-adaptation and interactions

(2008) Florencio Pazos et al.   EMBO JOURNAL

Co-evolution and co-adaptation in protein networks

(2008) David Juan et al.   FEBS LETTERS

Correlated Evolution of Interacting Proteins: Looking Behind the Mirrortree

(2008) Maricel G. Kann et al.   JOURNAL OF MOLECULAR BIOLOGY

Coevolution at protein complex interfaces can be detected by the complementarity trace with important impact for predictive docking

(2008) H. Madaoui et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Conservation and topology of protein interaction networks under duplication-divergence evolution

(2008) K. Evlampiev et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The evolutionary dynamics of the Saccharomyces cerevisiae protein interaction network after duplication

(2008) A. Presser et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

High-confidence prediction of global interactomes based on genome-wide coevolutionary networks

(2008) D. Juan et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

High-Quality Binary Protein Interaction Map of the Yeast Interactome Network

(2008) H. Yu et al.   SCIENCE

Why Do Hubs in the Yeast Protein Interaction Network Tend To Be Essential: Reexamining the Connection between the Network Topology and Essentiality

(2008) Elena Zotenko et al.   PLoS Computational Biology

Sequence-based prediction of protein-protein interactions by means of codon usage

(2008) Hamed Najafabadi et al.   GENOME BIOLOGY