Bayesian Proteoform Modeling Improves Protein Quantification of Global Proteomic Measurements

Biomarkers for ectopic pregnancy and pregnancy of unknown location

(2013) Suneeta Senapati et al.   FERTILITY AND STERILITY

Proteoform: a single term describing protein complexity

(2013) Lloyd M Smith et al.   NATURE METHODS

Diet-induced obesity reprograms the inflammatory response of the murine lung to inhaled endotoxin

(2013) Susan C. Tilton et al.   TOXICOLOGY AND APPLIED PHARMACOLOGY

A review of statistical methods for protein identification using tandem mass spectrometry

(2013) William Noble et al.   Statistics and Its Interface

Biomarkers for Alzheimer's disease in plasma, serum and blood - conceptual and practical problems

(2013) Douglas Galasko et al.   Alzheimers Research & Therapy

The role of proteomics in prostate cancer research: Biomarker discovery and validation

(2012) Elisa Pin et al.   CLINICAL BIOCHEMISTRY

Breast cancer biomarkers: proteomic discovery and translation to clinically relevant assays

(2012) Liping Chung et al.   Expert Review of Proteomics

Accurate Mass Spectrometry Based Protein Quantification via Shared Peptides

(2012) Banu Dost et al.   JOURNAL OF COMPUTATIONAL BIOLOGY

Quantitative analysis of peptides and proteins in biomedicine by targeted mass spectrometry

(2012) Michael A Gillette et al.   NATURE METHODS

How advancement in biological network analysis methods empowers proteomics

(2012) Wilson W. B. Goh et al.   PROTEOMICS

Including shared peptides for estimating protein abundances: A significant improvement for quantitative proteomics

(2012) Mélisande Blein-Nicolas et al.   PROTEOMICS

A comparative analysis of computational approaches to relative protein quantification using peptide peak intensities in label-free LC-MS proteomics experiments

(2012) Melissa M. Matzke et al.   PROTEOMICS

Mass spectrometry for translational proteomics: progress and clinical implications

(2012) Erin Baker et al.   Genome Medicine

Improved quality control processing of peptide-centric LC-MS proteomics data

(2011) Melissa M. Matzke et al.   BIOINFORMATICS

A Novel Alignment Method and Multiple Filters for Exclusion of Unqualified Peptides To Enhance Label-Free Quantification Using Peptide Intensity in LC–MS/MS

(2011) Xianyin Lai et al.   JOURNAL OF PROTEOME RESEARCH

A statistical selection strategy for normalization procedures in LC-MS proteomics experiments through dataset-dependent ranking of normalization scaling factors

(2011) Bobbie-Jo M. Webb-Robertson et al.   PROTEOMICS

Combined Statistical Analyses of Peptide Intensities and Peptide Occurrences Improves Identification of Significant Peptides from MS-Based Proteomics Data

(2010) Bobbie-Jo M. Webb-Robertson et al.   JOURNAL OF PROTEOME RESEARCH

Decon2LS: An open-source software package for automated processing and visualization of high resolution mass spectrometry data

(2009) Navdeep Jaitly et al.   BMC BIOINFORMATICS

A Bayesian Approach to Protein Inference Problem in Shotgun Proteomics

(2009) Yong Fuga Li et al.   JOURNAL OF COMPUTATIONAL BIOLOGY

Mouse-Specific Tandem IgY7-SuperMix Immunoaffinity Separations for Improved LC-MS/MS Coverage of the Plasma Proteome

(2009) Jian-Ying Zhou et al.   JOURNAL OF PROTEOME RESEARCH

DAnTE: a statistical tool for quantitative analysis of -omics data

(2008) A. D. Polpitiya et al.   BIOINFORMATICS

Fully Automated Four-Column Capillary LC−MS System for Maximizing Throughput in Proteomic Analyses

(2007) Eric A. Livesay et al.   ANALYTICAL CHEMISTRY