Proteome-wide Subcellular Topologies ofE. coliPolypeptides Database (STEPdb)
Published 2014 View Full Article
- Home
- Publications
- Publication Search
- Publication Details
Title
Proteome-wide Subcellular Topologies ofE. coliPolypeptides Database (STEPdb)
Authors
Keywords
-
Journal
MOLECULAR & CELLULAR PROTEOMICS
Volume 13, Issue 12, Pages 3674-3687
Publisher
American Society for Biochemistry & Molecular Biology (ASBMB)
Online
2014-09-11
DOI
10.1074/mcp.o114.041137
References
Ask authors/readers for more resources
Related references
Note: Only part of the references are listed.- Protein transport by the bacterial Tat pathway
- (2014) Roshani Patel et al. BIOCHIMICA ET BIOPHYSICA ACTA-MOLECULAR CELL RESEARCH
- The membrane insertase YidC
- (2014) Ross E. Dalbey et al. BIOCHIMICA ET BIOPHYSICA ACTA-MOLECULAR CELL RESEARCH
- LocTree3 prediction of localization
- (2014) Tatyana Goldberg et al. NUCLEIC ACIDS RESEARCH
- Breaking on through to the other side: protein export through the bacterial Sec system
- (2013) Katerina E. Chatzi et al. BIOCHEMICAL JOURNAL
- Identification of SPOR Domain Amino Acids Important for Septal Localization, Peptidoglycan Binding, and a Disulfide Bond in the Cell Division Protein FtsN
- (2013) T. R. Duncan et al. JOURNAL OF BACTERIOLOGY
- Membrane Association via an Amino-terminal Amphipathic Helix Is Required for the Cellular Organization and Function of RNase II
- (2013) Feng Lu et al. JOURNAL OF BIOLOGICAL CHEMISTRY
- New Insights into the Interplay Between the Lysine Transporter LysP and the pH Sensor CadC in Escherichia Coli
- (2013) Martina Rauschmeier et al. JOURNAL OF MOLECULAR BIOLOGY
- Phenotypic analysis of Eschericia coli mutants lacking L,D-transpeptidases
- (2013) A. N. Sanders et al. MICROBIOLOGY-SGM
- Pfam: the protein families database
- (2013) Robert D. Finn et al. NUCLEIC ACIDS RESEARCH
- Assembly of the Transmembrane Domain of E. coli PhoQ Histidine Kinase: Implications for Signal Transduction from Molecular Simulations
- (2013) Thomas Lemmin et al. PLoS Computational Biology
- TheEscherichia coliPeripheral Inner Membrane Proteome
- (2012) Malvina Papanastasiou et al. MOLECULAR & CELLULAR PROTEOMICS
- PaxDb, a Database of Protein Abundance Averages Across All Three Domains of Life
- (2012) M. Wang et al. MOLECULAR & CELLULAR PROTEOMICS
- Discovery of an archetypal protein transport system in bacterial outer membranes
- (2012) Joel Selkrig et al. NATURE STRUCTURAL & MOLECULAR BIOLOGY
- Gene Ontology Annotations and Resources
- (2012) NUCLEIC ACIDS RESEARCH
- Chaperone-usher pathways: diversity and pilus assembly mechanism
- (2012) A. Busch et al. PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES
- On the path to uncover the bacterial type II secretion system
- (2012) B. Douzi et al. PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES
- Prokaryotic genome regulation: A revolutionary paradigm
- (2012) Akira ISHIHAMA PROCEEDINGS OF THE JAPAN ACADEMY SERIES B-PHYSICAL AND BIOLOGICAL SCIENCES
- Membrane binding of Escherichia coli RNase E catalytic domain stabilizes protein structure and increases RNA substrate affinity
- (2012) O. N. Murashko et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- The Mycobacterium tuberculosis Very-Long-Chain Fatty Acyl-CoA Synthetase: Structural Basis for Housing Lipid Substrates Longer than the Enzyme
- (2012) Charlotta S. Andersson et al. STRUCTURE
- A Protein Export Pathway Involving Escherichia coli Porins
- (2012) Gerd Prehna et al. STRUCTURE
- Engineering RNA endonucleases with customized sequence specificities
- (2012) Rajarshi Choudhury et al. Nature Communications
- Comparative multi-omics systems analysis of Escherichia coli strains B and K-12
- (2012) Sung Yoon et al. GENOME BIOLOGY
- Role of the MotB linker in the assembly and activation of the bacterial flagellar motor
- (2011) Jenna O'Neill et al. ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY
- Membrane Localization of Small Proteins inEscherichia coli
- (2011) Fanette Fontaine et al. JOURNAL OF BIOLOGICAL CHEMISTRY
- The free and bound forms of Lpp occupy distinct subcellular locations in Escherichia coli
- (2011) Charles E. Cowles et al. MOLECULAR MICROBIOLOGY
- The superoxide dismutase SodA is targeted to the periplasm in a SecA-dependent manner by a novel mechanism
- (2011) Martin Krehenbrink et al. MOLECULAR MICROBIOLOGY
- SignalP 4.0: discriminating signal peptides from transmembrane regions
- (2011) Thomas Nordahl Petersen et al. NATURE METHODS
- EcoliWiki: a wiki-based community resource for Escherichia coli
- (2011) Brenley K. McIntosh et al. NUCLEIC ACIDS RESEARCH
- The UniProt-GO Annotation database in 2011
- (2011) E. C. Dimmer et al. NUCLEIC ACIDS RESEARCH
- SMART 7: recent updates to the protein domain annotation resource
- (2011) I. Letunic et al. NUCLEIC ACIDS RESEARCH
- The N-Terminal Amphipathic Helix of the Topological Specificity Factor MinE Is Associated with Shaping Membrane Curvature
- (2011) Yu-Ling Shih et al. PLoS One
- Conserved Mutations in the Pneumococcal Bacteriocin Transporter Gene, blpA, Result in a Complex Population Consisting of Producers and Cheaters
- (2011) M. R. Son et al. mBio
- ClubSub-P: Cluster-Based Subcellular Localization Prediction for Gram-Negative Bacteria and Archaea
- (2011) Nagarajan Paramasivam et al. Frontiers in Microbiology
- One-Dimensional Capillary Liquid Chromatographic Separation Coupled with Tandem Mass Spectrometry Unveils theEscherichia coliProteome on a Microarray Scale
- (2010) Mio Iwasaki et al. ANALYTICAL CHEMISTRY
- Amphipathic C-terminal region of Escherichia coli NADH dehydrogenase-2 mediates membrane localization
- (2010) Josefina M. Villegas et al. ARCHIVES OF BIOCHEMISTRY AND BIOPHYSICS
- Osmolyte-Induced Folding of an Intrinsically Disordered Protein: Folding Mechanism in the Absence of Ligand
- (2010) Yu-Chu Chang et al. BIOCHEMISTRY
- Complexome ofEscherichia coliEnvelope Proteins under Normal Physiological Conditions
- (2010) Jian-Yi Pan et al. JOURNAL OF PROTEOME RESEARCH
- YaeJ is a novel ribosome-associated protein in Escherichia coli that can hydrolyze peptidyl-tRNA on stalled ribosomes
- (2010) Y. Handa et al. NUCLEIC ACIDS RESEARCH
- Quantifying E. coli Proteome and Transcriptome with Single-Molecule Sensitivity in Single Cells
- (2010) Y. Taniguchi et al. SCIENCE
- The Bacterial Cell Envelope
- (2010) T. J. Silhavy et al. Cold Spring Harbor Perspectives in Biology
- Promiscuous Substrate Recognition in Folding and Assembly Activities of the Trigger Factor Chaperone
- (2009) Erik Martinez-Hackert et al. CELL
- A periplasmic aldehyde oxidoreductase represents the first molybdopterin cytosine dinucleotide cofactor containing molybdo-flavoenzyme fromEscherichia coli
- (2009) Meina Neumann et al. FEBS Journal
- Peptidoglycan-associated lipoprotein (Pal) of Gram-negative bacteria: function, structure, role in pathogenesis and potential application in immunoprophylaxis
- (2009) Renata Godlewska et al. FEMS MICROBIOLOGY LETTERS
- Small Stress Response Proteins in Escherichia coli: Proteins Missed by Classical Proteomic Studies
- (2009) M. R. Hemm et al. JOURNAL OF BACTERIOLOGY
- The peptidoglycan-binding (PGB) Domain of the Escherichia coli Pal Protein can also Function as the PGB Domain in E. coli Flagellar Motor Protein MotB
- (2009) Y. Hizukuri et al. JOURNAL OF BIOCHEMISTRY
- Identification of a Post-targeting Step Required for Efficient Cotranslational Translocation of Proteins across theEscherichia coliInner Membrane
- (2009) Pu Tian et al. JOURNAL OF BIOLOGICAL CHEMISTRY
- Compensation for the loss of the conserved membrane targeting sequence of FtsA provides new insights into its function
- (2009) Daisuke Shiomi et al. MOLECULAR MICROBIOLOGY
- The IntAct molecular interaction database in 2010
- (2009) B. Aranda et al. NUCLEIC ACIDS RESEARCH
- The HU Regulon Is Composed of Genes Responding to Anaerobiosis, Acid Stress, High Osmolarity and SOS Induction
- (2009) Jacques Oberto et al. PLoS One
- Crystal structure of the membrane-bound bifunctional transglycosylase PBP1b from Escherichia coli
- (2009) M.-T. Sung et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Bimodal protein solubility distribution revealed by an aggregation analysis of the entire ensemble of Escherichia coli proteins
- (2009) T. Niwa et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Exploring the inner membrane proteome of Escherichia coli: which proteins are eluding detection and why?
- (2009) Andreas Bernsel et al. TRENDS IN MICROBIOLOGY
- EchoLOCATION: an in silico analysis of the subcellular locations of Escherichia coli proteins and comparison with experimentally derived locations
- (2008) Richard S. P. Horler et al. BIOINFORMATICS
- Function and structure of inherently disordered proteins
- (2008) A Keith Dunker et al. CURRENT OPINION IN STRUCTURAL BIOLOGY
- RodZ (YfgA) is required for proper assembly of the MreB actin cytoskeleton and cell shape in E. coli
- (2008) Felipe O Bendezú et al. EMBO JOURNAL
- NCBI BLAST: a better web interface
- (2008) M. Johnson et al. NUCLEIC ACIDS RESEARCH
- EcoCyc: A comprehensive view of Escherichia coli biology
- (2008) I. M. Keseler et al. NUCLEIC ACIDS RESEARCH
- InterPro: the integrative protein signature database
- (2008) S. Hunter et al. NUCLEIC ACIDS RESEARCH
Find Funding. Review Successful Grants.
Explore over 25,000 new funding opportunities and over 6,000,000 successful grants.
ExploreFind the ideal target journal for your manuscript
Explore over 38,000 international journals covering a vast array of academic fields.
Search