High-throughput Database Search and Large-scale Negative Polarity Liquid Chromatography–Tandem Mass Spectrometry with Ultraviolet Photodissociation for Complex Proteomic Samples

Increasing peptide identifications and decreasing search times for ETD spectra by pre-processing and calculation of parent precursor charge

(2012) Viswanadham Sridhara et al.   Proteome Science

Tyrosine sulfation in a Gram-negative bacterium

(2012) Sang-Wook Han et al.   Nature Communications

Implementing Photodissociation in an Orbitrap Mass Spectrometer

(2011) Lisa A. Vasicek et al.   JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY

193-nm photodissociation of singly and multiply charged peptide anions for acidic proteome characterization

(2011) James A. Madsen et al.   PROTEOMICS

Negative Electron Transfer Dissociation of Deprotonated Phosphopeptide Anions: Choice of Radical Cation Reagent and Competition between Electron and Proton Transfer

(2010) Malwina Huzarska et al.   ANALYTICAL CHEMISTRY

Precursor Charge State Prediction for Electron Transfer Dissociation Tandem Mass Spectra

(2010) Vagisha Sharma et al.   JOURNAL OF PROTEOME RESEARCH

Ultrafast Ultraviolet Photodissociation at 193 nm and its Applicability to Proteomic Workflows

(2010) James A. Madsen et al.   JOURNAL OF PROTEOME RESEARCH

Comparative dissociation of peptide polyanions by electron impact and photo-induced electron detachment

(2010) Vincent Larraillet et al.   JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY

Improving Software Performance for Peptide Electron Transfer Dissociation Data Analysis by Implementation of Charge State- and Sequence-Dependent Scoring

(2010) Peter R. Baker et al.   MOLECULAR & CELLULAR PROTEOMICS

Proteomics retrenches

(2010) Peter Mitchell   NATURE BIOTECHNOLOGY

The pros and cons of peptide-centric proteomics

(2010) Mark W Duncan et al.   NATURE BIOTECHNOLOGY

Charge Prediction Machine: Tool for Inferring Precursor Charge States of Electron Transfer Dissociation Tandem Mass Spectra

(2009) Paulo C. Carvalho et al.   ANALYTICAL CHEMISTRY

Collisions or Electrons? Protein Sequence Analysis in the 21st Century

(2009) Joshua J. Coon   ANALYTICAL CHEMISTRY

Mass spectrometry: from proteomics to metabolomics and lipidomics

(2009) William J. Griffiths et al.   CHEMICAL SOCIETY REVIEWS

MassMatrix: A database search program for rapid characterization of proteins and peptides from tandem mass spectrometry data

(2009) Hua Xu et al.   PROTEOMICS

Glycopeptide analysis by mass spectrometry

(2008) Dilusha S. Dalpathado et al.   ANALYST

Chromogenic Cross-Linker for the Characterization of Protein Structure by Infrared Multiphoton Dissociation Mass Spectrometry

(2008) Myles W. Gardner et al.   ANALYTICAL CHEMISTRY

A robust linear regression based algorithm for automated evaluation of peptide identifications from shotgun proteomics by use of reversed-phase liquid chromatography retention time

(2008) Hua Xu et al.   BMC BIOINFORMATICS

Monte Carlo Simulation-Based Algorithms for Analysis of Shotgun Proteomic Data

(2008) Hua Xu et al.   JOURNAL OF PROTEOME RESEARCH

Electron Capture/Transfer versus Collisionally Activated/Induced Dissociations: Solo or Duet?

(2008) Roman A. Zubarev et al.   JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY

Towards liquid chromatography time-scale peptide sequencing and characterization of post-translational modifications in the negative-ion mode using electron detachment dissociation tandem mass spectrometry

(2008) Frank Kjeldsen et al.   JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY

Comprehensive mass-spectrometry-based proteome quantification of haploid versus diploid yeast

(2008) Lyris M. F. de Godoy et al.   NATURE