Effects of Water-Saving Irrigation on Emissions of Greenhouse Gases and Prokaryotic Communities in Rice Paddy Soil

Dry/Wet Cycles Change the Activity and Population Dynamics of Methanotrophs in Rice Field Soil

(2013) K. Ma et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

A record of N2O and CH4 emissions and underlying soil processes of Korean rice paddies as affected by different water management practices

(2013) Sina Berger et al.   BIOGEOCHEMISTRY

SINA: Accurate high-throughput multiple sequence alignment of ribosomal RNA genes

(2012) Elmar Pruesse et al.   BIOINFORMATICS

Seasonal variations of CH4 and N2O emissions in response to water management of paddy fields located in Southeast China

(2012) Huijing Hou et al.   CHEMOSPHERE

Fertilizer management practices and greenhouse gas emissions from rice systems: A quantitative review and analysis

(2012) Bruce A. Linquist et al.   FIELD CROPS RESEARCH

The unaccounted yet abundant nitrous oxide-reducing microbial community: a potential nitrous oxide sink

(2012) Christopher M Jones et al.   ISME Journal

Identification of Active Denitrifiers in Rice Paddy Soil by DNA- and RNA-Based Analyses

(2012) Megumi Yoshida et al.   MICROBES AND ENVIRONMENTS

Pattern of methane emission and water productivity under different methods of rice crop establishment

(2012) Priyanka Suryavanshi et al.   Paddy and Water Environment

Unexpected nondenitrifier nitrous oxide reductase gene diversity and abundance in soils

(2012) R. A. Sanford et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Intermittent irrigation changes production, oxidation, and emission of CH4 in paddy fields determined with stable carbon isotope technique

(2012) Guangbin Zhang et al.   SOIL BIOLOGY & BIOCHEMISTRY

Changes in community structure of methanogenic archaea brought about by water-saving practice in paddy field soil

(2012) Takeshi Watanabe et al.   SOIL BIOLOGY & BIOCHEMISTRY

Responses of MethanogenmcrAGenes and Their Transcripts to an Alternate Dry/Wet Cycle of Paddy Field Soil

(2011) Ke Ma et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Nitrifying and denitrifying pathways of methanotrophic bacteria

(2011) Lisa Y. Stein et al.   BIOCHEMICAL SOCIETY TRANSACTIONS

UCHIME improves sensitivity and speed of chimera detection

(2011) Robert C. Edgar et al.   BIOINFORMATICS

Removing Noise From Pyrosequenced Amplicons

(2011) Christopher Quince et al.   BMC BIOINFORMATICS

An agronomic assessment of greenhouse gas emissions from major cereal crops

(2011) Bruce Linquist et al.   GLOBAL CHANGE BIOLOGY

Fast, scalable generation of high-quality protein multiple sequence alignments using Clustal Omega

(2011) F. Sievers et al.   Molecular Systems Biology

Interactive Tree Of Life v2: online annotation and display of phylogenetic trees made easy

(2011) I. Letunic et al.   NUCLEIC ACIDS RESEARCH

Methane and nitrous oxide emissions from paddy field as affected by water-saving irrigation

(2011) Shihong Yang et al.   PHYSICS AND CHEMISTRY OF THE EARTH

Genetic potential for N2O emissions from the sediment of a free water surface constructed wetland

(2011) Arantzazu García-Lledó et al.   WATER RESEARCH

Regulation of microbial methane production and oxidation by intermittent drainage in rice field soil

(2010) Ke Ma et al.   FEMS MICROBIOLOGY ECOLOGY

Importance of denitrifiers lacking the genes encoding the nitrous oxide reductase for N2O emissions from soil

(2010) LAURENT PHILIPPOT et al.   GLOBAL CHANGE BIOLOGY

Anaerobic Oxidation of Methane: Progress with an Unknown Process

(2009) Katrin Knittel et al.   Annual Review of Microbiology

Diversity of nirK Denitrifying Genes and Transcripts in an Agricultural Soil

(2009) S. Wertz et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Introducing mothur: Open-Source, Platform-Independent, Community-Supported Software for Describing and Comparing Microbial Communities

(2009) P. D. Schloss et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Three Genomes from the Phylum Acidobacteria Provide Insight into the Lifestyles of These Microorganisms in Soils

(2009) N. L. Ward et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Development of 16S rRNA gene-targeted primers for detection of archaeal anaerobic methanotrophs (ANMEs)

(2009) Ai Miyashita et al.   FEMS MICROBIOLOGY LETTERS

Global estimations of the inventory and mitigation potential of methane emissions from rice cultivation conducted using the 2006 Intergovernmental Panel on Climate Change Guidelines

(2009) Xiaoyuan Yan et al.   GLOBAL BIOGEOCHEMICAL CYCLES

Fast UniFrac: facilitating high-throughput phylogenetic analyses of microbial communities including analysis of pyrosequencing and PhyloChip data

(2009) Micah Hamady et al.   ISME Journal

FastTree: Computing Large Minimum Evolution Trees with Profiles instead of a Distance Matrix

(2009) M. N. Price et al.   MOLECULAR BIOLOGY AND EVOLUTION

Mitigating release of the potent greenhouse gas N2O from the nitrogen cycle – could enzymic regulation hold the key?

(2009) David Richardson et al.   TRENDS IN BIOTECHNOLOGY

Production of NO, N2O and N2 by extracted soil bacteria, regulation by NO2− and O2 concentrations

(2008) Nicholas Morley et al.   FEMS MICROBIOLOGY ECOLOGY

Soil type links microbial colonization of rice roots to methane emission

(2008) RALF CONRAD et al.   GLOBAL CHANGE BIOLOGY

The Ribosomal Database Project: improved alignments and new tools for rRNA analysis

(2008) J. R. Cole et al.   NUCLEIC ACIDS RESEARCH

Biochemical cycling in the rhizosphere having an impact on global change

(2008) L. Philippot et al.   PLANT AND SOIL

The Mosaic Genome of Anaeromyxobacter dehalogenans Strain 2CP-C Suggests an Aerobic Common Ancestor to the Delta-Proteobacteria

(2008) Sara H. Thomas et al.   PLoS One