4.2 Article

Identification of exotic North American crayfish in Europe by DNA barcoding

Journal

Publisher

EDP SCIENCES S A
DOI: 10.1051/kmae/2011025

Keywords

COI; barcoding; invasive crayfish; Europe; North America; Orconectes; Procambarus

Funding

  1. ONEMA (Office National de l'Eau et des Milieux Aquatiques)
  2. Czech Ministry of Education [MSM0021620828]

Ask authors/readers for more resources

Several alien crayfish of North American origin have become established in Europe in recent decades, but their identification is often confusing. Our aim was to verify the taxonomic status of their European populations by DNA barcoding. We sequenced the cytochrome c oxidase subunit I (COI) gene fragment of individuals representing all American crayfish known from European waters, and compared the results with reference sequences from North America. Our results confirm the morphological identification of Orconectes juvenilis from a population in eastern France, and of the marbled crayfish (Marmorkrebs), i.e., a parthenogenetic form of Procambarus fallax, from south-western Germany. Sequences of most individuals of presumed Procambarus acutus from the Netherlands were similar to American P. cf. acutus, but one was divergent, closer to a sequence of a reference individual of P. cf. zonangulus. However, divergences among three American P. cf. zonangulus samples were also high, comparable to interspecific variation within cambarid species complexes. The divergence between O. immunis from Europe and America also reached values corresponding to those observed among distinct Orconectes species. Genetic variation in the American range of these crayfish should therefore be further studied. Our study shows that DNA barcoding is useful for the rapid and accurate identification of exotic crayfish in Europe, and also provides insights into overall variation within these taxa.

Authors

I am an author on this paper
Click your name to claim this paper and add it to your profile.

Reviews

Primary Rating

4.2
Not enough ratings

Secondary Ratings

Novelty
-
Significance
-
Scientific rigor
-
Rate this paper

Recommended

Article Biodiversity Conservation

Climate change would prevail over land use change in shaping the future distribution of Triturus marmoratus in France

Clementine Preau, Romain Bertrand, Yann Sellier, Frederic Grandjean, Francis Isselin-Nondedeu

Summary: The study found that climate change is the primary driver of the future distribution range reduction of Triturus marmoratus in France, with land use/land cover change playing a secondary role. The species may not be able to track the northward shift of its suitable habitat rapidly enough due to its insufficient dispersal ability and habitat fragmentation caused by human activities.

ANIMAL CONSERVATION (2022)

Review Mycology

Pathogenicity of animal and plant parasitic Aphanomyces spp and their economic impact on aquaculture and agriculture

Thomas Becking, Andrei Kiselev, Valentina Rossi, David Street-jones, Frederic Grandjean, Elodie Gaulin

Summary: Parasitic Aphanomyces species pose a global threat to agri- and aquaculture, resulting in significant annual damages. Through global trade, Aphanomyces has spread to almost all continents, affecting pea, sugar beet, fish, and crayfish production. This review provides an overview of current research on Aphanomyces genus, summarizing the biology, pathogenicity factors, diseases, distribution, and control strategies of four pathogenic Aphanomyces species.

FUNGAL BIOLOGY REVIEWS (2022)

Article Ornithology

Contrasting patterns of geographical song variation in two closely related passerine species with a simple song

Ivana Czocherova, Lucia Rubacova, Adam Petrusek, Tereza Petruskova

Summary: Decades of research have shown that bird songs often vary geographically, even in species with simple songs. In this study, differences in song structure and parameters were observed among geographically distant populations of River Warblers, but not in Grasshopper Warblers. This highlights species-specific traits contributing to song divergence and the diversity in singing behavior among songbirds.

JOURNAL OF ORNITHOLOGY (2022)

Article Environmental Sciences

The invasive crayfish Cherax quadricarinatus facing chlordecone in Martinique: Bioaccumulation and depuration study

Thomas Baudry, Eric Gismondi, Jean-Pierre Gout, Alexandre Arque, Juliette Smith-Ravin, Frederic Grandjean

Summary: The redclaw crayfish was introduced to Martinique Island for aquaculture purposes in the 21st century, but due to chlordecone pollution in the rivers, there is a risk of contamination in the crayfish muscle which may pose a serious risk to consumers. The study highlighted the rapid and continuous bioconcentration of chlordecone in the crayfish muscle, even after 20 days of depuration in chlordecone-free water.

CHEMOSPHERE (2022)

Article Zoology

Iguana insularis (Iguanidae) from the southern Lesser Antilles: An endemic lineage endangered by hybridization

Michel Breuil, David Schikorski, Barbara Vuillaume, Ulrike Krauss, Jennifer C. Daltry, Glenroy Gaymes, Joanne Gaymes, Olivier Lepais, Nicolas Bech, Misel Jelic, Thomas Becking, Frederic Grandjean

Summary: The newly described horned iguana Iguana insularis from the southern Lesser Antilles is separated into two subspecies: I. insularis sanctaluciae from St. Lucia and I. insularis insularis from the Grenadines. The study used genetic and morphological analysis to complete the description and found high levels of introgression and hybridization with other Iguana species in some populations. This research is important for the conservation of native iguanas, as they face threats from invasive iguanas and require urgent conservation action.

ZOOKEYS (2022)

Article Genetics & Heredity

The NGS Magic Pudding: A Nanopore-Led Long-Read Genome Assembly for the Commercial Australian Freshwater Crayfish, Cherax destructor

Christopher M. Austin, Laurence J. Croft, Frederic Grandjean, Han Ming Gan

Summary: The yabby genome was assembled using Nanopore and Illumina sequencing methods, resulting in the most contiguous freshwater crayfish genome assembly. An unusually large number of cellulase genes were found in the genome, which is relevant to understanding the nutrition and ecology of this species.

FRONTIERS IN GENETICS (2022)

Article Biodiversity Conservation

Diversity of Land Snail Tribe Helicini (Gastropoda: Stylommatophora: Helicidae): Where Do We Stand after 20 Years of Sequencing Mitochondrial Markers?

Ondrej Korabek, Lucie Jurickova, Adam Petrusek

Summary: Sequences of mitochondrial genes have revolutionized the understanding of animal diversity and continue to be an important tool in biodiversity research. In this study of the western Palaearctic land snail fauna, mitochondrial data were used to revise the classification of the Helix genus and provide insights into species-level taxonomy and past range dynamics. The study also highlights the variation in distribution patterns of mitochondrial lineages within species. Despite the gaps in the current dataset, mitochondrial sequences remain a valuable source of information for studying intraspecific diversity over large areas and taxa.

DIVERSITY-BASEL (2022)

Article Biodiversity Conservation

The promising combination of a remote sensing approach and landscape connectivity modelling at a fine scale in urban planning

Elie Morin, Pierre-Alexis Herrault, Yvonnick Guinard, Frederic Grandjean, Nicolas Bech

Summary: Urban landscapes are rapidly changing ecosystems. Designing and modeling ecological networks is crucial for land management. Remote sensing can produce reliable land cover maps, improving connectivity indices and providing new insights into conservation planning when combined with fine-scale landscape connectivity modeling.

ECOLOGICAL INDICATORS (2022)

Article Biodiversity Conservation

Hybrid swarm as a result of hybridization between two alien and two native water frog species (genus Pelophylax) in Central Croatia: Crna Mlaka fishpond acting as a species melting pot?

Misel Jelic, Damjan Franjevic, Domagoj Dikic, Petra Korlevic, Matej Vucic, Dusan Jelic, Thomas Becking, Frederic Grandjean, Goran Klobucar

Summary: This study found that the Crna Mlaka fishponds in Central Croatia are at a high risk of being invaded by non-native water frog species, leading to introgressive hybridization and genetic admixture. The presence of hybrid forms and introgressed mtDNA indicates the existence of a unique hybrid swarm in this location. The loss of the hybridogenetic reproductive system of Pelophylax kl. esculentus is also observed.

BIOLOGICAL INVASIONS (2022)

Article Biodiversity Conservation

Long-term changes in the prevalence of the crayfish plague pathogen and its genotyping in invasive crayfish species in Czechia

Michaela Mojzisova, Jitka Svobodova, Eva Kozubikova-Balcarova, Eva Struncova, Robin Stift, Michal Bily, Antonin Kouba, Adam Petrusek

Summary: The presence of North American alien crayfish in Europe has led to declines in native crayfish populations due to their role as carriers of Aphanomyces astaci, the pathogen responsible for crayfish plague. In Czechia, screening for A. astaci revealed new hotspots of infected crayfish and the potential for interspecific transmission between different crayfish species. Despite fluctuations, A. astaci prevalence in North American host populations generally does not vary significantly over time, with some populations still posing a threat to native crayfish.

NEOBIOTA (2022)

Article Environmental Sciences

Suitability of Natura 2000 sites for threatened freshwater species under projected climate change

Timo Basen, Christoph Chucholl, Sarah Oexle, Albert Ros, Alexander Brinker

Summary: A study reveals that the habitat suitability for most of the aquatic species in the European special areas of conservation (SACs) will decline severely with climate change, undermining the effectiveness of currently protected areas. To overcome this potential conservation gap, actions such as enhancing climate resilience within SAC freshwater habitats, restoring stream connectivity among SACs, assisting migration to new suitable areas, and designating new protected areas within climate refugia are essential.

AQUATIC CONSERVATION-MARINE AND FRESHWATER ECOSYSTEMS (2022)

Article Environmental Sciences

Environmental DNA survey to detect an endemic cryptic fish, Anablepsoides cryptocallus, in tropical freshwater streams

Thomas Baudry, Quentin Mauvisseau, Alexandre Arque, Jean-Pierre Gout, Carine Delaunay, Hugo J. de Boer, Frederic Grandjean

Summary: In this study, an eDNA detection protocol was developed to investigate the presence of Anablepsoides cryptocallus, the only endemic freshwater fish of Martinique. The presence of the species was confirmed in 27 sites using eDNA detection. eDNA-based detection was found to be more effective and less time-consuming than conventional fishing, making it a relevant tool for future studies.

AQUATIC CONSERVATION-MARINE AND FRESHWATER ECOSYSTEMS (2023)

Article Ecology

In both directions: Expansions of European land snails to the north and south from glacial refugia

Ondrej Korabek, Tereza Adamcova, Malgorzata Prockow, Adam Petrusek, Bernhard Hausdorf, Lucie Jurickova

Summary: The postglacial recolonization of four Central European land snail species was facilitated by persistence close to the colonized areas rather than by dispersal ability allowing for colonization from distant sources. The most important source of postglacial expansions to Central Europe was refugia located adjacent to the Pannonian Basin, but there were also substantial southward expansions. Climate factors and biological interactions may explain the rarity of such southward expansions in Europe.

JOURNAL OF BIOGEOGRAPHY (2023)

Article Ecology

A synthesis of biological invasion hypotheses associated with the introduction-naturalisation-invasion continuum

Ella Z. Daly, Olivier Chabrerie, Francois Massol, Benoit Facon, Manon C. M. Hess, Aurelie Tasiemski, Frederic Grandjean, Matthieu Chauvat, Frederique Viard, Estelle Forey, Laurent Folcher, Elise Buisson, Thomas Boivin, Sylvie Baltora-Rosset, Romain Ulmer, Patricia Gibert, Gabrielle Thiebaut, Jelena H. Pantel, Tina Heger, David M. Richardson, David Renault

Summary: With the increasing level of biological invasions in the Anthropocene, there is still significant debate and lack of clarity on the determinants of success, impact, and sustaining mechanisms of introduced species. Empirical studies show divergent impacts and effects of biotic and abiotic factors, hindering the creation of a unified theory. The proposed synthesis categorizes invasion hypotheses along a timeline, providing a framework to navigate the theories and select appropriate concepts based on the stage of invasion.

OIKOS (2023)

Article Ornithology

Reevaluation of dialect boundaries in the Yellowhammer (Emberiza citrinella) based on citizen science data: Should we split or lump?

Lucie Diblikova, Pavel Pipek, Stanislav Vosolsobe, Adam Petrusek, Tereza Petruskova

Summary: Dialects are a common form of geographic variation in birdsong, which provide opportunities for focused studies on vocalization spatial patterns. The Yellowhammer has been a subject of citizen science projects that focus on its dialect distribution, with the most successful project being the Dialects of Czech Yellowhammers (DCY). In this study, we quantitatively analyzed the variation in the terminal song element of three dialects defined in DCY and found that pooling them into two distinct groups better reflects the variation in the songs and their spatial distribution.

AVIAN RESEARCH (2023)

No Data Available