The ITS region of groundwater amphipods: length, secondary structure and phylogenetic information content in Crangonyctoids and Niphargids

Discordance in Variation of the ITS Region and the Mitochondrial COI Gene in the Subterranean Amphipod Crangonyx islandicus

(2011) Etienne Kornobis et al.   JOURNAL OF MOLECULAR EVOLUTION

Internal Transcribed Spacer 2 (nu ITS2 rRNA) Sequence-Structure Phylogenetics: Towards an Automated Reconstruction of the Green Algal Tree of Life

(2011) Mark A. Buchheim et al.   PLoS One

The ITS1-5.8S-ITS2 Sequence Region in the Musaceae: Structure, Diversity and Use in Molecular Phylogeny

(2011) Eva Hřibová et al.   PLoS One

Molecular relationships of gammaridean amphipods from Arctic sea ice

(2011) Jang-Seu Ki et al.   POLAR BIOLOGY

Including RNA secondary structures improves accuracy and robustness in reconstruction of phylogenetic trees

(2010) Alexander Keller et al.   Biology Direct

DIVEIN: a web server to analyze phylogenies, sequence divergence, diversity, and informative sites

(2010) Wenjie Deng et al.   BIOTECHNIQUES

Unsuspected diversity of Niphargus amphipods in the chemoautotrophic cave ecosystem of Frasassi, central Italy

(2010) Jean-François Flot et al.   BMC EVOLUTIONARY BIOLOGY

Molecular taxonomy and phylogenetic affinities of two groundwater amphipods, Crangonyx islandicus and Crymostygius thingvallensis, endemic to Iceland

(2010) Etienne Kornobis et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Use of ITS2 Region as the Universal DNA Barcode for Plants and Animals

(2010) Hui Yao et al.   PLoS One

Genetic structure of the benthic amphipod Diporeia (Amphipoda: Pontoporeiidae) and its relationship to abundance in Lake Superior

(2009) Erik M. Pilgrim et al.   CANADIAN JOURNAL OF FISHERIES AND AQUATIC SCIENCES

ITS2 sequence–structure analysis in phylogenetics: A how-to manual for molecular systematics

(2009) Jörg Schultz et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Accurate and efficient reconstruction of deep phylogenies from structured RNAs

(2009) Roman R. Stocsits et al.   NUCLEIC ACIDS RESEARCH

The ITS2 Database III—sequences and structures for phylogeny

(2009) Christian Koetschan et al.   NUCLEIC ACIDS RESEARCH

Fast Statistical Alignment

(2009) Robert K. Bradley et al.   PLoS Computational Biology

ProfDistS: (profile-) distance based phylogeny on sequence--structure alignments

(2008) M. Wolf et al.   BIOINFORMATICS

Fungal Community Ecology: A Hybrid Beast with a Molecular Master

(2008) Kabir G. Peay et al.   BIOSCIENCE

RNAalifold: improved consensus structure prediction for RNA alignments

(2008) Stephan H Bernhart et al.   BMC BIOINFORMATICS

5.8S-28S rRNA interaction and HMM-based ITS2 annotation

(2008) Alexander Keller et al.   GENE

Molecular Evolution and Phylogenetic Utility of the Internal Transcribed Spacer 2 (ITS2) in Calyptratae (Diptera: Brachycera)

(2008) Zhong-kui Song et al.   JOURNAL OF MOLECULAR EVOLUTION

Extensive 5.8S nrDNA polymorphism in Mammillaria (Cactaceae) with special reference to the identification of pseudogenic internal transcribed spacer regions

(2008) Doerte Harpke et al.   JOURNAL OF PLANT RESEARCH

Preliminary Analysis of Length and GC Content Variation in the Ribosomal First Internal Transcribed Spacer (ITS1) of Marine Animals

(2008) S. Chow et al.   MARINE BIOTECHNOLOGY

Phylogenetic analysis of the internal transcribed spacer (ITS) region in Menyanthaceae using predicted secondary structure

(2008) Nicholas P. Tippery et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

A phylogenetic perspective on 160 years of troubled taxonomy ofNiphargus(Crustacea: Amphipoda)

(2008) Cene Fišer et al.   ZOOLOGICA SCRIPTA