- Home
- Publications
- Publication Search
- Publication Details
Title
Proteomic techniques to probe the ubiquitin landscape
Authors
Keywords
-
Journal
PROTEOMICS
Volume 16, Issue 2, Pages 273-287
Publisher
Wiley
Online
2015-10-14
DOI
10.1002/pmic.201500290
References
Ask authors/readers for more resources
Related references
Note: Only part of the references are listed.- Direct Sensing and Discrimination among Ubiquitin and Ubiquitin Chains Using Solid-State Nanopores
- (2015) Iftach Nir et al. BIOPHYSICAL JOURNAL
- Phosphorylation of ubiquitin at Ser65 affects its polymerization, targets, and proteome-wide turnover
- (2015) D. L. Swaney et al. EMBO REPORTS
- Deubiquitinase-based analysis of ubiquitin chain architecture using Ubiquitin Chain Restriction (UbiCRest)
- (2015) Manuela K Hospenthal et al. Nature Protocols
- Protein neddylation: beyond cullin–RING ligases
- (2015) Radoslav I. Enchev et al. NATURE REVIEWS MOLECULAR CELL BIOLOGY
- A comprehensive method for detecting ubiquitinated substrates using TR-TUBE
- (2015) Yukiko Yoshida et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Neutron-Encoded Mass Signatures for Quantitative Top-Down Proteomics
- (2014) Timothy W. Rhoads et al. ANALYTICAL CHEMISTRY
- Structural and Functional Insights to Ubiquitin-Like Protein Conjugation
- (2014) Frederick C. Streich et al. Annual Review of Biophysics
- Targeting the Ubiquitin-Proteasome System in Heart Disease: The Basis for New Therapeutic Strategies
- (2014) Oliver Drews et al. ANTIOXIDANTS & REDOX SIGNALING
- Middle-Down Mass Spectrometry Enables Characterization of Branched Ubiquitin Chains
- (2014) Ellen M. Valkevich et al. BIOCHEMISTRY
- Enhanced Protein Degradation by Branched Ubiquitin Chains
- (2014) Hermann-Josef Meyer et al. CELL
- Ubiquitin Ser65 phosphorylation affects ubiquitin structure, chain assembly and hydrolysis
- (2014) T. Wauer et al. EMBO JOURNAL
- Atypical Ubiquitylation in Yeast Targets Lysine-less Asi2 for Proteasomal Degradation
- (2014) Mirta Boban et al. JOURNAL OF BIOLOGICAL CHEMISTRY
- Ubiquitin Profiling in Liver Using a Transgenic Mouse with Biotinylated Ubiquitin
- (2014) Benoît Lectez et al. JOURNAL OF PROTEOME RESEARCH
- StUbEx: Stable Tagged Ubiquitin Exchange System for the Global Investigation of Cellular Ubiquitination
- (2014) Vyacheslav Akimov et al. JOURNAL OF PROTEOME RESEARCH
- Mass Spectral Enhanced Detection of Ubls Using SWATH Acquisition: MEDUSA—Simultaneous Quantification of SUMO and Ubiquitin-Derived Isopeptides
- (2014) John R. Griffiths et al. JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY
- Usingin VivoBiotinylated Ubiquitin to Describe a Mitotic Exit Ubiquitome from Human Cells
- (2014) Mingwei Min et al. MOLECULAR & CELLULAR PROTEOMICS
- Rsp5/Nedd4 is the main ubiquitin ligase that targets cytosolic misfolded proteins following heat stress
- (2014) Nancy N. Fang et al. NATURE CELL BIOLOGY
- The Ufm1 Cascade
- (2014) Jens Daniel et al. Cells
- An immunoaffinity purification method for the proteomic analysis of ubiquitinated protein complexes
- (2013) Petra Schwertman et al. ANALYTICAL BIOCHEMISTRY
- Neutron Encoded Labeling for Peptide Identification
- (2013) Christopher M. Rose et al. ANALYTICAL CHEMISTRY
- The parallel reaction monitoring method contributes to a highly sensitive polyubiquitin chain quantification
- (2013) Hikaru Tsuchiya et al. BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS
- Enhanced Detection of Ubiquitin Isopeptides Using Reductive Methylation
- (2013) Navin Chicooree et al. JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY
- The E3 Ligase Parkin Maintains Mitochondrial Integrity by Increasing Linear Ubiquitination of NEMO
- (2013) Anne Kathrin Müller-Rischart et al. MOLECULAR CELL
- Ubiquitin Binding by a CUE Domain Regulates Ubiquitin Chain Formation by ERAD E3 Ligases
- (2013) Katrin Bagola et al. MOLECULAR CELL
- Neutron-encoded mass signatures for multiplexed proteome quantification
- (2013) Alexander S Hebert et al. NATURE METHODS
- Selective monitoring of ubiquitin signals with genetically encoded ubiquitin chain–specific sensors
- (2013) Sjoerd J L van Wijk et al. Nature Protocols
- Mixed-Linkage Ubiquitin Chains Send Mixed Messages
- (2013) Mark A. Nakasone et al. STRUCTURE
- Synaptic Protein Ubiquitination in Rat Brain Revealed by Antibody-based Ubiquitome Analysis
- (2012) Chan Hyun Na et al. JOURNAL OF PROTEOME RESEARCH
- Characterizing Ubiquitination Sites by Peptide-based Immunoaffinity Enrichment
- (2012) Daisy Bustos et al. MOLECULAR & CELLULAR PROTEOMICS
- Refined Preparation and Use of Anti-diglycine Remnant (K-ε-GG) Antibody Enables Routine Quantification of 10,000s of Ubiquitination Sites in Single Proteomics Experiments
- (2012) Namrata D. Udeshi et al. MOLECULAR & CELLULAR PROTEOMICS
- Atypical ubiquitylation — the unexplored world of polyubiquitin beyond Lys48 and Lys63 linkages
- (2012) Yogesh Kulathu et al. NATURE REVIEWS MOLECULAR CELL BIOLOGY
- Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues
- (2012) Alicia Lundby et al. Nature Communications
- Global Identification of Modular Cullin-RING Ligase Substrates
- (2011) Michael J. Emanuele et al. CELL
- Uncovering Ubiquitin and Ubiquitin-like Signaling Networks
- (2011) Alfred C. O. Vertegaal CHEMICAL REVIEWS
- Cysteine-dependent Ubiquitination of Pex18p Is Linked to Cargo Translocation across the Peroxisomal Membrane
- (2011) Astrid Hensel et al. JOURNAL OF BIOLOGICAL CHEMISTRY
- Polyubiquitin Linkage Profiles in Three Models of Proteolytic Stress Suggest the Etiology of Alzheimer Disease
- (2011) Eric B. Dammer et al. JOURNAL OF BIOLOGICAL CHEMISTRY
- Proteomic Survey of Ubiquitin-Linked Nuclear Proteins in Interferon-Stimulated Macrophages
- (2011) Ji Young Kim et al. JOURNAL OF INTERFERON AND CYTOKINE RESEARCH
- Proteome-wide Identification of Ubiquitylation Sites by Conjugation of Engineered Lysine-less Ubiquitin
- (2011) Kiyotaka Oshikawa et al. JOURNAL OF PROTEOME RESEARCH
- The Fasted/Fed Mouse Metabolic Acetylome: N6-Acetylation Differences Suggest Acetylation Coordinates Organ-Specific Fuel Switching
- (2011) Li Yang et al. JOURNAL OF PROTEOME RESEARCH
- Mass Spectrometry-based Proteomics Using Q Exactive, a High-performance Benchtop Quadrupole Orbitrap Mass Spectrometer
- (2011) Annette Michalski et al. MOLECULAR & CELLULAR PROTEOMICS
- A Perturbed Ubiquitin Landscape Distinguishes Between Ubiquitin in Trafficking and in Proteolysis
- (2011) Inbal Ziv et al. MOLECULAR & CELLULAR PROTEOMICS
- Ubiquitinated Proteome: Ready for Global?
- (2011) Yi Shi et al. MOLECULAR & CELLULAR PROTEOMICS
- A Proteome-wide, Quantitative Survey of In Vivo Ubiquitylation Sites Reveals Widespread Regulatory Roles
- (2011) Sebastian A. Wagner et al. MOLECULAR & CELLULAR PROTEOMICS
- Systematic and Quantitative Assessment of the Ubiquitin-Modified Proteome
- (2011) Woong Kim et al. MOLECULAR CELL
- Proteomic snapshot of the EGF-induced ubiquitin network
- (2011) E. Argenzio et al. Molecular Systems Biology
- SHARPIN forms a linear ubiquitin ligase complex regulating NF-κB activity and apoptosis
- (2011) Fumiyo Ikeda et al. NATURE
- Linear ubiquitination prevents inflammation and regulates immune signalling
- (2011) Björn Gerlach et al. NATURE
- Quantitative Phosphoproteomics Identifies Substrates and Functional Modules of Aurora and Polo-Like Kinase Activities in Mitotic Cells
- (2011) A. N. Kettenbach et al. Science Signaling
- Ubiquitination of Substrates by Esterification
- (2011) Xiaoli Wang et al. TRAFFIC
- A Novel Proteomics Approach to Identify SUMOylated Proteins and Their Modification Sites in Human Cells
- (2010) Frederic Galisson et al. MOLECULAR & CELLULAR PROTEOMICS
- A Data Set of Human Endogenous Protein Ubiquitination Sites
- (2010) Yi Shi et al. MOLECULAR & CELLULAR PROTEOMICS
- A Novel Strategy to Isolate Ubiquitin Conjugates Reveals Wide Role for Ubiquitination during Neural Development
- (2010) Maribel Franco et al. MOLECULAR & CELLULAR PROTEOMICS
- Improved Quantitative Mass Spectrometry Methods for Characterizing Complex Ubiquitin Signals
- (2010) Lilian Phu et al. MOLECULAR & CELLULAR PROTEOMICS
- Mass Spectrometric Analysis of Lysine Ubiquitylation Reveals Promiscuity at Site Level
- (2010) Jannie M. R. Danielsen et al. MOLECULAR & CELLULAR PROTEOMICS
- Characterizing the connectivity of poly-ubiquitin chains by selected reaction monitoring mass spectrometry
- (2010) Hamid Mirzaei et al. Molecular BioSystems
- Ubiquitylation of an ERAD Substrate Occurs on Multiple Types of Amino Acids
- (2010) Yuichiro Shimizu et al. MOLECULAR CELL
- A Cytoplasmic ATM-TRAF6-cIAP1 Module Links Nuclear DNA Damage Signaling to Ubiquitin-Mediated NF-κB Activation
- (2010) Michael Hinz et al. MOLECULAR CELL
- Network organization of the human autophagy system
- (2010) Christian Behrends et al. NATURE
- Global analysis of lysine ubiquitination by ubiquitin remnant immunoaffinity profiling
- (2010) Guoqiang Xu et al. NATURE BIOTECHNOLOGY
- A minimal peptide substrate in biotin holoenzyme synthetase-catalyzed biotinylation
- (2010) Dorothy Beckett et al. PROTEIN SCIENCE
- Comprehensive lysine acetylomes emerging from bacteria to humans
- (2010) Go-Woon Kim et al. TRENDS IN BIOCHEMICAL SCIENCES
- Regulation and Cellular Roles of Ubiquitin-Specific Deubiquitinating Enzymes
- (2009) Francisca E. Reyes-Turcu et al. Annual Review of Biochemistry
- Full Dynamic Range Proteome Analysis of S. cerevisiae by Targeted Proteomics
- (2009) Paola Picotti et al. CELL
- Quantitative Proteomics Reveals the Function of Unconventional Ubiquitin Chains in Proteasomal Degradation
- (2009) Ping Xu et al. CELL
- Specific Recognition of Linear Ubiquitin Chains by NEMO Is Important for NF-κB Activation
- (2009) Simin Rahighi et al. CELL
- Linear polyubiquitination: a new regulator of NF-κB activation
- (2009) Kazuhiro Iwai et al. EMBO REPORTS
- Efficient protection and isolation of ubiquitylated proteins using tandem ubiquitin-binding entities
- (2009) Roland Hjerpe et al. EMBO REPORTS
- Analysis of the human E2 ubiquitin conjugating enzyme protein interaction network
- (2009) G. Markson et al. GENOME RESEARCH
- Signaling network analysis of ubiquitin-mediated proteins suggests correlations between the 26S proteasome and tumor progression
- (2009) Cong Fu et al. Molecular BioSystems
- Origin and function of ubiquitin-like proteins
- (2009) Mark Hochstrasser NATURE
- Involvement of linear polyubiquitylation of NEMO in NF-κB activation
- (2009) Fuminori Tokunaga et al. NATURE CELL BIOLOGY
- Quantitative analysis of phosphopeptides in search of the disease biomarker from the hepatocellular carcinoma specimen
- (2009) Hyoung-Joo Lee et al. PROTEOMICS
- Characterization of Polyubiquitin Chain Structure by Middle-down Mass Spectrometry
- (2008) Ping Xu et al. ANALYTICAL CHEMISTRY
- Systematic Approach for Validating the Ubiquitinated Proteome
- (2008) Nicholas T. Seyfried et al. ANALYTICAL CHEMISTRY
- Relative Quantification of Proteins in Human Cerebrospinal Fluids by MS/MS Using 6-Plex Isobaric Tags
- (2008) Loïc Dayon et al. ANALYTICAL CHEMISTRY
- Efficient approaches for characterizing ubiquitinated proteins: Figure 1
- (2008) Roland Hjerpe et al. BIOCHEMICAL SOCIETY TRANSACTIONS
- Ubiquitin Chain Editing Revealed by Polyubiquitin Linkage-Specific Antibodies
- (2008) Kim Newton et al. CELL
- MaxQuant enables high peptide identification rates, individualized p.p.b.-range mass accuracies and proteome-wide protein quantification
- (2008) Jürgen Cox et al. NATURE BIOTECHNOLOGY
- A database of mass spectrometric assays for the yeast proteome
- (2008) Paola Picotti et al. NATURE METHODS
- Iodoacetamide-induced artifact mimics ubiquitination in mass spectrometry
- (2008) Michael L Nielsen et al. NATURE METHODS
- Affinity Makes the Difference: Nonselective Interaction of the UBA Domain of Ubiquilin-1 with Monomeric Ubiquitin and Polyubiquitin Chains
- (2007) Daoning Zhang et al. JOURNAL OF MOLECULAR BIOLOGY
Add your recorded webinar
Do you already have a recorded webinar? Grow your audience and get more views by easily listing your recording on Peeref.
Upload NowAsk a Question. Answer a Question.
Quickly pose questions to the entire community. Debate answers and get clarity on the most important issues facing researchers.
Get Started