Predicting protein folding rate change upon point mutation using residue-level coevolutionary information

Folding RaCe: a robust method for predicting changes in protein folding rates upon point mutations

(2015) Priyashree Chaudhary et al.   BIOINFORMATICS

Co-evolutionary constraints of globular proteins correlate with their folding rates

(2015) Saurav Mallik et al.   FEBS LETTERS

Assembly constraints drive co-evolution among ribosomal constituents

(2015) S. Mallik et al.   NUCLEIC ACIDS RESEARCH

Biophysics of protein evolution and evolutionary protein biophysics

(2014) T. Sikosek et al.   Journal of the Royal Society Interface

Toward rationally redesigning bacterial two-component signaling systems using coevolutionary information

(2014) Ryan R. Cheng et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Coevolutionary information, protein folding landscapes, and the thermodynamics of natural selection

(2014) F. Morcos et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The network of stabilizing contacts in proteins studied by coevolutionary data

(2013) Sara Lui et al.   JOURNAL OF CHEMICAL PHYSICS

The Hidden Codes That Shape Protein Evolution

(2013) R. J. Weatheritt et al.   SCIENCE

Real value prediction of protein folding rate change upon point mutation

(2012) Liang-Tsung Huang et al.   JOURNAL OF COMPUTER-AIDED MOLECULAR DESIGN

Multi-State Proteins: Approach Allowing Experimental Determination of the Formation Order of Structure Elements in the Green Fluorescent Protein

(2012) Tatiana N. Melnik et al.   PLoS One

Direct-coupling analysis of residue coevolution captures native contacts across many protein families

(2011) F. Morcos et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

First insight into the prediction of protein folding rate change upon point mutation

(2010) Liang-Tsung Huang et al.   BIOINFORMATICS

An Integrated View of Molecular Coevolution in Protein-Protein Interactions

(2010) S. C. Lovell et al.   MOLECULAR BIOLOGY AND EVOLUTION

Insights into protein folding mechanisms from large scale analysis of mutational effects

(2010) A. N. Naganathan et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Converging concepts of protein folding in vitro and in vivo

(2009) F Ulrich Hartl et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

A critical assessment of the topomer search model of protein folding using a continuum explicit-chain model with extensive conformational sampling

(2005) Stefan Wallin et al.   PROTEIN SCIENCE