Functional Annotation of Cotesia congregata Bracovirus: Identification of Viral Genes Expressed in Parasitized Host Immune Tissues

Characterization of the polydnaviral 'T. rostrale virus' (TrV) gene family: TrV1 expression inhibits in vitro cell proliferation

(2013) A. Djoumad et al.   JOURNAL OF GENERAL VIROLOGY

The Transcriptome of the Baculovirus Autographa californica Multiple Nucleopolyhedrovirus in Trichoplusia ni Cells

(2013) Y.-R. Chen et al.   JOURNAL OF VIROLOGY

The Bracovirus Genome of the Parasitoid Wasp Cotesia congregata Is Amplified within 13 Replication Units, Including Sequences Not Packaged in the Particles

(2013) F. Louis et al.   JOURNAL OF VIROLOGY

Functional endogenous viral elements in the genome of the parasitoid wasp Cotesia congregata: insights into the evolutionary dynamics of bracoviruses

(2013) A. Bezier et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

When parasitic wasps hijacked viruses: genomic and functional evolution of polydnaviruses

(2013) E. A. Herniou et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Adaptive Selection on Bracovirus Genomes Drives the Specialization of Cotesia Parasitoid Wasps

(2013) Séverine Jancek et al.   PLoS One

Parasitization by Cotesia chilonis Influences Gene Expression in Fatbody and Hemocytes of Chilo suppressalis

(2013) Shun-Fan Wu et al.   PLoS One

Polydnavirus-wasp associations: evolution, genome organization, and function

(2013) Michael R Strand et al.   Current Opinion in Virology

Parasitoid polydnaviruses: evolution, pathology and applications

(2012) Dawn Gundersen-Rindal et al.   BIOCONTROL SCIENCE AND TECHNOLOGY

Using Tablet for visual exploration of second-generation sequencing data

(2012) I. Milne et al.   BRIEFINGS IN BIOINFORMATICS

Simultaneous RNA-Seq Analysis of a Mixed Transcriptome of Rice and Blast Fungus Interaction

(2012) Yoshihiro Kawahara et al.   PLoS One

The role of the 3' untranslated region in post-transcriptional regulation of protein expression in mammalian cells.

(2012) Eva Matoulkova et al.   RNA Biology

Artemis: an integrated platform for visualization and analysis of high-throughput sequence-based experimental data

(2011) T. Carver et al.   BIOINFORMATICS

Deep sequencing-based transcriptome analysis of Plutella xylostella larvae parasitized by Diadegma semiclausum

(2011) Kayvan Etebari et al.   BMC GENOMICS

Transfer of a chromosomal Maverick to endogenous bracovirus in a parasitoid wasp

(2011) C. Dupuy et al.   GENETICA

The genome of the leaf-cutting antAcromyrmex echinatiorsuggests key adaptations to advanced social life and fungus farming

(2011) Sanne Nygaard et al.   GENOME RESEARCH

Differential expression in RNA-seq: A matter of depth

(2011) S. Tarazona et al.   GENOME RESEARCH

Lepidopteran transcriptome analysis following infection by phylogenetically unrelated polydnaviruses highlights differential and common responses

(2011) Bertille Provost et al.   INSECT BIOCHEMISTRY AND MOLECULAR BIOLOGY

Transcriptomic profiling of Microplitis demolitor bracovirus reveals host, tissue and stage-specific patterns of activity

(2011) K. Bitra et al.   JOURNAL OF GENERAL VIROLOGY

454-pyrosequencing of Coffea arabica leaves infected by the rust fungus Hemileia vastatrix reveals in planta-expressed pathogen-secreted proteins and plant functions in a late compatible plant-rust interaction

(2011) DIANA FERNANDEZ et al.   MOLECULAR PLANT PATHOLOGY

Fast, scalable generation of high-quality protein multiple sequence alignments using Clustal Omega

(2011) F. Sievers et al.   Molecular Systems Biology

SignalP 4.0: discriminating signal peptides from transmembrane regions

(2011) Thomas Nordahl Petersen et al.   NATURE METHODS

Paleozoic origin of insect large dsDNA viruses

(2011) J. Theze et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Deep sequencing of Cotesia vestalis bracovirus reveals the complexity of a polydnavirus genome

(2011) Ya-feng Chen et al.   VIROLOGY

The evolution of gene duplications: classifying and distinguishing between models

(2010) Hideki Innan et al.   NATURE REVIEWS GENETICS

Functional and Evolutionary Insights from the Genomes of Three Parasitoid Nasonia Species

(2010) J. H. Werren et al.   SCIENCE

Analysis of Virion Structural Components Reveals Vestiges of the Ancestral Ichnovirus Genome

(2010) Anne-Nathalie Volkoff et al.   PLoS Pathogens

Identification of parasite-responsive cysteine proteases in Manduca sexta

(2009) Céline Serbielle et al.   BIOLOGICAL CHEMISTRY

Polydnavirus hidden face: The genes producing virus particles of parasitic wasps

(2009) Annie Bézier et al.   JOURNAL OF INVERTEBRATE PATHOLOGY

IkB genes encoded in Cotesia plutellae bracovirus suppress an antiviral response and enhance baculovirus pathogenicity against the diamondback moth, Plutella xylostella

(2009) Sungwoo Bae et al.   JOURNAL OF INVERTEBRATE PATHOLOGY

MEME SUITE: tools for motif discovery and searching

(2009) T. L. Bailey et al.   NUCLEIC ACIDS RESEARCH

VIROLOGY: Making Nice with Viruses

(2009) D. B. Stoltz et al.   SCIENCE

Polydnaviruses of Braconid Wasps Derive from an Ancestral Nudivirus

(2009) A. Bezier et al.   SCIENCE

Bracovirus gene products are highly divergent from insect proteins

(2008) Annie Bézier et al.   ARCHIVES OF INSECT BIOCHEMISTRY AND PHYSIOLOGY

Mapping and quantifying mammalian transcriptomes by RNA-Seq

(2008) Ali Mortazavi et al.   NATURE METHODS

Comparative genomics of mutualistic viruses of Glyptapanteles parasitic wasps

(2008) Christopher A Desjardins et al.   GENOME BIOLOGY