Magnetic Fractionation and Proteomic Dissection of Cellular Organelles Occupied by the Late Replication Complexes of Semliki Forest Virus

Species-specific impact of the autophagy machinery on Chikungunya virus infection

(2013) Delphine Judith et al.   EMBO REPORTS

Thiouracil Cross-Linking Mass Spectrometry: a Cell-Based Method To Identify Host Factors Involved in Viral Amplification

(2013) E. M. Lenarcic et al.   JOURNAL OF VIROLOGY

Differential Proteome Analysis of Chikungunya Virus Infection on Host Cells

(2013) Christina Li-Ping Thio et al.   PLoS One

Dephosphorylation of HuR Protein during Alphavirus Infection Is Associated with HuR Relocalization to the Cytoplasm

(2012) Alexa M. Dickson et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Mapping of Chikungunya Virus Interactions with Host Proteins Identified nsP2 as a Highly Connected Viral Component

(2012) M. Bourai et al.   JOURNAL OF VIROLOGY

Chikungunya Virus nsP3 Blocks Stress Granule Assembly by Recruitment of G3BP into Cytoplasmic Foci

(2012) J. J. Fros et al.   JOURNAL OF VIROLOGY

Hypervariable Domains of nsP3 Proteins of New World and Old World Alphaviruses Mediate Formation of Distinct, Virus-Specific Protein Complexes

(2012) N. J. Foy et al.   JOURNAL OF VIROLOGY

Evasion of the Innate Immune Response: the Old World Alphavirus nsP2 Protein Induces Rapid Degradation of Rpb1, a Catalytic Subunit of RNA Polymerase II

(2012) I. Akhrymuk et al.   JOURNAL OF VIROLOGY

Sequestration of G3BP coupled with efficient translation inhibits stress granules in Semliki Forest virus infection

(2012) Marc D. Panas et al.   MOLECULAR BIOLOGY OF THE CELL

Chikungunya Virus Infection of Cell Lines: Analysis of the East, Central and South African Lineage

(2012) Nitwara Wikan et al.   PLoS One

Phenoloxidase Activity Acts as a Mosquito Innate Immune Response against Infection with Semliki Forest Virus

(2012) Julio Rodriguez-Andres et al.   PLoS Pathogens

Andromeda: A Peptide Search Engine Integrated into the MaxQuant Environment

(2011) Jürgen Cox et al.   JOURNAL OF PROTEOME RESEARCH

Cellular Poly(C) Binding Proteins 1 and 2 Interact with Porcine Reproductive and Respiratory Syndrome Virus Nonstructural Protein 1  and Support Viral Replication

(2011) L. K. Beura et al.   JOURNAL OF VIROLOGY

Quantitative Proteomic Analyses of Human Cytomegalovirus-Induced Restructuring of Endoplasmic Reticulum-Mitochondrial Contacts at Late Times of Infection

(2011) Aiping Zhang et al.   MOLECULAR & CELLULAR PROTEOMICS

The dependence of viral RNA replication on co-opted host factors

(2011) Peter D. Nagy et al.   NATURE REVIEWS MICROBIOLOGY

Diverse roles of host RNA binding proteins in RNA virus replication

(2011) Zhenghe Li et al.   RNA Biology

Sindbis Virus Usurps the Cellular HuR Protein to Stabilize Its Transcripts and Promote Productive Infections in Mammalian and Mosquito Cells

(2010) Kevin J. Sokoloski et al.   Cell Host & Microbe

A Simple Method for Gene Expression and Chromatin Profiling of Individual Cell Types within a Tissue

(2010) Roger B. Deal et al.   DEVELOPMENTAL CELL

Quantitative Proteomics Using SILAC Coupled to LC−MS/MS Reveals Changes in the Nucleolar Proteome in Influenza A Virus-Infected Cells

(2010) Edward Emmott et al.   JOURNAL OF PROTEOME RESEARCH

Host Factors Associated with the Sindbis Virus RNA-Dependent RNA Polymerase: Role for G3BP1 and G3BP2 in Virus Replication

(2010) I. M. Cristea et al.   JOURNAL OF VIROLOGY

Phosphatidylinositol 3-Kinase-, Actin-, and Microtubule-Dependent Transport of Semliki Forest Virus Replication Complexes from the Plasma Membrane to Modified Lysosomes

(2010) P. Spuul et al.   JOURNAL OF VIROLOGY

Functional Sindbis Virus Replicative Complexes Are Formed at the Plasma Membrane

(2010) E. I. Frolova et al.   JOURNAL OF VIROLOGY

Mechanistic Consequences of hnRNP C Binding to Both RNA Termini of Poliovirus Negative-Strand RNA Intermediates

(2010) K. J. Ertel et al.   JOURNAL OF VIROLOGY

Magnetic nanoparticle-based isolation of endocytic vesicles reveals a role of the heat shock protein GRP75 in macromolecular delivery

(2010) A. Wittrup et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Identification of host factors involved in coronavirus replication by quantitative proteomics analysis

(2010) Mijke W. Vogels et al.   PROTEOMICS

Subcellular fractionation methods and strategies for proteomics

(2010) Yie Hou Lee et al.   PROTEOMICS

Elucidation of the avian nucleolar proteome by quantitative proteomics using SILAC and changes in cells infected with the coronavirus infectious bronchitis virus

(2010) Edward Emmott et al.   PROTEOMICS

Heterogeneous nuclear ribonucleoproteins (hnRNPs) in cellular processes: Focus on hnRNP E1's multifunctional regulatory roles

(2010) A. Chaudhury et al.   RNA

Selective localization of PCBP2 to cytoplasmic processing bodies

(2009) Ken Fujimura et al.   BIOCHIMICA ET BIOPHYSICA ACTA-MOLECULAR CELL RESEARCH

Interaction of Sindbis virus non-structural protein 3 with poly(ADP-ribose) polymerase 1 in neuronal cells

(2009) E. Park et al.   JOURNAL OF GENERAL VIROLOGY

Random Insertion Mutagenesis of Sindbis Virus Nonstructural Protein 2 and Selection of Variants Incapable of Downregulating Cellular Transcription

(2009) I. Frolov et al.   JOURNAL OF VIROLOGY

Novel Functions of the Alphavirus Nonstructural Protein nsP3 C-Terminal Region

(2009) M. Varjak et al.   JOURNAL OF VIROLOGY

Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources

(2009) Da Wei Huang et al.   Nature Protocols

Identification of human hnRNP C1/C2 as a dengue virus NS1-interacting protein

(2008) Sansanee Noisakran et al.   BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS

Thein VitroRNA Synthesizing Activity of the Isolated Arterivirus Replication/Transcription Complex Is Dependent on a Host Factor

(2008) Martijn J. van Hemert et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

A New Role for ns Polyprotein Cleavage in Sindbis Virus Replication

(2008) R. Gorchakov et al.   JOURNAL OF VIROLOGY

Different Types of nsP3-Containing Protein Complexes in Sindbis Virus-Infected Cells

(2008) R. Gorchakov et al.   JOURNAL OF VIROLOGY

Identification of Replication-competent HSV-1 Cgal+Strain Signaling Targets in Human Hepatoma Cells by Functional Organelle Proteomics

(2008) Enrique Santamaría et al.   MOLECULAR & CELLULAR PROTEOMICS

MaxQuant enables high peptide identification rates, individualized p.p.b.-range mass accuracies and proteome-wide protein quantification

(2008) Jürgen Cox et al.   NATURE BIOTECHNOLOGY

Bioinformatics enrichment tools: paths toward the comprehensive functional analysis of large gene lists

(2008) Da Wei Huang et al.   NUCLEIC ACIDS RESEARCH

STRING 8--a global view on proteins and their functional interactions in 630 organisms

(2008) L. J. Jensen et al.   NUCLEIC ACIDS RESEARCH

SARS-Coronavirus Replication/Transcription Complexes Are Membrane-Protected and Need a Host Factor for Activity In Vitro

(2008) Martijn J. van Hemert et al.   PLoS Pathogens