Subcellular fractionation methods and strategies for proteomics

Size-Sorting Combined with Improved Nanocapillary Liquid Chromatography−Mass Spectrometry for Identification of Intact Proteins up to 80 kDa

(2010) Adaikkalam Vellaichamy et al.   ANALYTICAL CHEMISTRY

Roles of mitophagy and the mitochondrial permeability transition in remodeling of cultured rat hepatocytes

(2009) Sara Rodriguez-Enriquez et al.   Autophagy

Protein location prediction using atomic composition and global features of the amino acid sequence

(2009) Betsy Sheena Cherian et al.   BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS

Semi-supervised protein subcellular localization

(2009) Qian Xu et al.   BMC BIOINFORMATICS

Protein subcellular localization prediction of eukaryotes using a knowledge-based approach

(2009) Hsin-Nan Lin et al.   BMC BIOINFORMATICS

Recombinant protein expression by targeting pre-selected chromosomal loci

(2009) Kristina Nehlsen et al.   BMC BIOTECHNOLOGY

Construction of Functional Interaction Networks through Consensus Localization Predictions of the Human Proteome

(2009) Solip Park et al.   JOURNAL OF PROTEOME RESEARCH

SherLoc2: A High-Accuracy Hybrid Method for Predicting Subcellular Localization of Proteins

(2009) Sebastian Briesemeister et al.   JOURNAL OF PROTEOME RESEARCH

Peroxisomes from the Heavy Mitochondrial Fraction: Isolation by Zonal Free Flow Electrophoresis and Quantitative Mass Spectrometrical Characterization

(2009) Markus Islinger et al.   JOURNAL OF PROTEOME RESEARCH

Quantitative Organelle Proteomics of MCF-7 Breast Cancer Cells Reveals Multiple Subcellular Locations for Proteins in Cellular Functional Processes

(2009) Amal T. Qattan et al.   JOURNAL OF PROTEOME RESEARCH

Shape reconstruction of subcellular structures from live cell fluorescence microscopy images

(2009) J.A. Helmuth et al.   JOURNAL OF STRUCTURAL BIOLOGY

Proteomics of regulated secretory organelles

(2009) Yannick Brunner et al.   MASS SPECTROMETRY REVIEWS

Application of Proteomic Marker Ensembles to Subcellular Organelle Identification

(2009) Alexander Y. Andreyev et al.   MOLECULAR & CELLULAR PROTEOMICS

MitoMiner, an Integrated Database for the Storage and Analysis of Mitochondrial Proteomics Data

(2009) Anthony C. Smith et al.   MOLECULAR & CELLULAR PROTEOMICS

The Organelle Proteome of the DT40 Lymphocyte Cell Line

(2009) Stephanie L. Hall et al.   MOLECULAR & CELLULAR PROTEOMICS

The Mycobacterium bovis Bacille Calmette-Guérin Phagosome Proteome

(2009) Bai-Yu Lee et al.   MOLECULAR & CELLULAR PROTEOMICS

Identification of L-ferritin in Neuromelanin Granules of the Human Substantia Nigra

(2009) Florian Tribl et al.   MOLECULAR & CELLULAR PROTEOMICS

Proteomics Analysis of the Nucleolus in Adenovirus-infected Cells

(2009) Yun W. Lam et al.   MOLECULAR & CELLULAR PROTEOMICS

Unraveling the S-nitrosoproteome: Tools and strategies

(2009) Laura M. López-Sánchez et al.   PROTEOMICS

Subcellular proteomics of Trypanosoma cruzi reservosomes

(2009) Celso Sant'Anna et al.   PROTEOMICS

RSLpred: an integrative system for predicting subcellular localization of rice proteins combining compositional and evolutionary information

(2009) Rakesh Kaundal et al.   PROTEOMICS

A critical comparison between two classical and a kit-based method for mitochondria isolation

(2009) Sonja Hartwig et al.   PROTEOMICS

Proteomics of the lysosome

(2008) Torben Lübke et al.   BIOCHIMICA ET BIOPHYSICA ACTA-MOLECULAR CELL RESEARCH

DBMLoc: a Database of proteins with multiple subcellular localizations

(2008) Song Zhang et al.   BMC BIOINFORMATICS

ProLoc-GO: Utilizing informative Gene Ontology terms for sequence-based prediction of protein subcellular localization

(2008) Wen-Lin Huang et al.   BMC BIOINFORMATICS

A Mitochondrial Protein Compendium Elucidates Complex I Disease Biology

(2008) David J. Pagliarini et al.   CELL

Contributions of proteomics to understanding phagosome maturation

(2008) Lindsay D. Rogers et al.   CELLULAR MICROBIOLOGY

Exploration of Human ORFeome: High-Throughput Preparation of ORF Clones and Efficient Characterization of Their Protein Products

(2008) T. Nagase et al.   DNA RESEARCH

Discrimination between exosomes and HIV-1: Purification of both vesicles from cell-free supernatants

(2008) Réjean Cantin et al.   JOURNAL OF IMMUNOLOGICAL METHODS

Evaluation of Data-Dependent versus Targeted Shotgun Proteomic Approaches for Monitoring Transcription Factor Expression in Breast Cancer

(2008) Charanjit Sandhu et al.   JOURNAL OF PROTEOME RESEARCH

Can Proteomics Retire the Western Blot?

(2008) Matthias   Mann   JOURNAL OF PROTEOME RESEARCH

Affinity separation and enrichment methods in proteomic analysis

(2008) Xiangming Fang et al.   Journal of Proteomics

Identification of mitochondrial disease genes through integrative analysis of multiple datasets

(2008) Raeka S. Aiyar et al.   METHODS

Use of Fluorescence-activated Vesicle Sorting for Isolation of Naked2-associated, Basolaterally Targeted Exocytic Vesicles for Proteomics Analysis

(2008) Zheng Cao et al.   MOLECULAR & CELLULAR PROTEOMICS

Cell-PLoc: a package of Web servers for predicting subcellular localization of proteins in various organisms

(2008) Kuo-Chen Chou et al.   Nature Protocols

Novel Proteins, Putative Membrane Transporters, and an Integrated Metabolic Network Are Revealed by Quantitative Proteomic Analysis of Arabidopsis Cell Culture Peroxisomes

(2008) H. Eubel et al.   PLANT PHYSIOLOGY

PSLDoc: Protein subcellular localization prediction based on gapped-dipeptides and probabilistic latent semantic analysis

(2008) Jia-Ming Chang et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

Sequential detergent fractionation of primary neurons for proteomics studies

(2008) Simonetta Bernocco et al.   PROTEOMICS

Flow cytometry-assisted purification and proteomic analysis of the corticotropes dense-core secretory granules

(2008) Daniel J. Gauthier et al.   PROTEOMICS

Proteomic profiling of exosomes: Current perspectives

(2008) Richard J. Simpson et al.   PROTEOMICS

CD45 immunoaffinity depletion of vesicles from Jurkat T cells demonstrates that exosomes contain CD45: no evidence for a distinct exosome/HIV-1 budding pathway

(2008) Lori V Coren et al.   Retrovirology

PseAAC: A flexible web server for generating various kinds of protein pseudo amino acid composition

(2007) Hong-Bin Shen et al.   ANALYTICAL BIOCHEMISTRY

Systematic screens for human disease genes, from yeast to human and back

(2007) Fabiana Perocchi et al.   Molecular BioSystems

Sequence conserved for subcellular localization

(2002) Rajesh Nair et al.   PROTEIN SCIENCE