Genome and transcriptome of the regeneration-competent flatworm,Macrostomum lignano

A Transcriptomic-Phylogenomic Analysis of the Evolutionary Relationships of Flatworms

(2015) Bernhard Egger et al.   CURRENT BIOLOGY

On the organ trail: insights into organ regeneration in the planarian

(2015) Rachel H Roberts-Galbraith et al.   CURRENT OPINION IN GENETICS & DEVELOPMENT

Positional RNA-Seq identifies candidate genes for phenotypic engineering of sexual traits

(2015) Roberto Arbore et al.   Frontiers in Zoology

RNA-mediated epigenetic regulation of gene expression

(2015) Daniel Holoch et al.   NATURE REVIEWS GENETICS

Dual functions of Macpiwi1 in transposon silencing and stem cell maintenance in the flatwormMacrostomum lignano

(2015) Xin Zhou et al.   RNA

An Epigenetic Memory of Pregnancy in the Mouse Mammary Gland

(2015) Camila O. dos Santos et al.   Cell Reports

Fluorescent sperm in a transparent worm: validation of a GFP marker to study sexual selection

(2014) Lucas Marie-Orleach et al.   BMC EVOLUTIONARY BIOLOGY

Biological adhesion of the flatworm Macrostomum lignano relies on a duo-gland system and is mediated by a cell type-specific intermediate filament protein

(2014) Birgit Lengerer et al.   Frontiers in Zoology

Extensive Local Gene Duplication and Functional Divergence among Paralogs in Atlantic Salmon

(2014) Ian A. Warren et al.   Genome Biology and Evolution

Platyzoan Paraphyly Based on Phylogenomic Data Supports a Noncoelomate Ancestry of Spiralia

(2014) Torsten H. Struck et al.   MOLECULAR BIOLOGY AND EVOLUTION

Molecular insights into the origin of the Hox-TALE patterning system

(2014) Bruno Hudry et al.   eLife

Specialized progenitors and regeneration

(2013) P. W. Reddien   DEVELOPMENT

Planarian MBD2/3 is required for adult stem cell pluripotency independently of DNA methylation

(2013) Farah Jaber-Hijazi et al.   DEVELOPMENTAL BIOLOGY

SEX ALLOCATION ADJUSTMENT TO MATING GROUP SIZE IN A SIMULTANEOUS HERMAPHRODITE

(2013) Tim Janicke et al.   EVOLUTION

The genomes of four tapeworm species reveal adaptations to parasitism

(2013) Isheng J. Tsai et al.   NATURE

Dnmt2-dependent methylomes lack defined DNA methylation patterns

(2013) G. Raddatz et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Comparative analysis of tandem repeats from hundreds of species reveals unique insights into centromere evolution

(2013) Daniël P Melters et al.   GENOME BIOLOGY

Gene expression of pluripotency determinants is conserved between mammalian and planarian stem cells

(2012) Pinar Önal et al.   EMBO JOURNAL

Decreased neoblast progeny and increased cell death during starvation-induced planarian degrowth

(2012) Cristina González-Estévez et al.   INTERNATIONAL JOURNAL OF DEVELOPMENTAL BIOLOGY

The planarian neoblast: the rambling history of its origin and some current black boxes

(2012) Jaume Baguñ   INTERNATIONAL JOURNAL OF DEVELOPMENTAL BIOLOGY

Caudal-related Homeobox (Cdx) Protein-dependent Integration of Canonical Wnt Signaling on Paired-box 3 (Pax3) Neural Crest Enhancer

(2012) Oraly Sanchez- Ferras et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Insights into bilaterian evolution from three spiralian genomes

(2012) Oleg Simakov et al.   NATURE

KEGG OC: a large-scale automatic construction of taxonomy-based ortholog clusters

(2012) Akihiro Nakaya et al.   NUCLEIC ACIDS RESEARCH

Pluripotency in the Embryo and in Culture

(2012) J. Nichols et al.   Cold Spring Harbor Perspectives in Biology

Birds do it, bees do it, worms and ciliates do it too: DNA methylation from unexpected corners of the tree of life

(2012) Soojin Yi   GENOME BIOLOGY

The Transcription Factor Encyclopedia

(2012) Dimas Yusuf et al.   GENOME BIOLOGY

RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome

(2011) Bo Li et al.   BMC BIOINFORMATICS

Blastema induction in aneurogenic state and Prrx-1 regulation by MMPs and FGFs in Ambystoma mexicanum limb regeneration

(2011) Akira Satoh et al.   DEVELOPMENTAL BIOLOGY

Evolution of the Max and Mlx Networks in Animals

(2011) Lisa G. McFerrin et al.   Genome Biology and Evolution

Premetazoan Ancestry of the Myc–Max Network

(2011) Susan L. Young et al.   MOLECULAR BIOLOGY AND EVOLUTION

Extensive Chordate and Annelid Macrosynteny Reveals Ancestral Homeobox Gene Organization

(2011) J. H. L. Hui et al.   MOLECULAR BIOLOGY AND EVOLUTION

Full-length transcriptome assembly from RNA-Seq data without a reference genome

(2011) Manfred G Grabherr et al.   NATURE BIOTECHNOLOGY

Clonogenic Neoblasts Are Pluripotent Adult Stem Cells That Underlie Planarian Regeneration

(2011) D. E. Wagner et al.   SCIENCE

Planarian stem cells: a simple paradigm for regeneration

(2011) A. Aziz Aboobaker   TRENDS IN CELL BIOLOGY

Cytosine methylation regulates oviposition in the pathogenic blood fluke Schistosoma mansoni

(2011) Kathrin K. Geyer et al.   Nature Communications

The dynamic genome of Hydra

(2010) Jarrod A. Chapman et al.   NATURE

Differential expression analysis for sequence count data

(2010) Simon Anders et al.   GENOME BIOLOGY

The caudal regeneration blastema is an accumulation of rapidly proliferating stem cells in the flatworm Macrostomum lignano

(2009) Bernhard Egger et al.   BMC DEVELOPMENTAL BIOLOGY

Characterization of the stem cell system of the acoel Isodiametra pulchra

(2009) Katrien De Mulder et al.   BMC DEVELOPMENTAL BIOLOGY

dbx mediates neuronal specification and differentiation through cross-repressive, lineage-specific interactions with eve and hb9

(2009) H. Lacin et al.   DEVELOPMENT

Stem cells are differentially regulated during development, regeneration and homeostasis in flatworms

(2009) Katrien De Mulder et al.   DEVELOPMENTAL BIOLOGY

To Be or Not to Be a Flatworm: The Acoel Controversy

(2009) Bernhard Egger et al.   PLoS One

Lophotrochozoa internal phylogeny: new insights from an up-to-date analysis of nuclear ribosomal genes

(2009) J. Paps et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

A core Klf circuitry regulates self-renewal of embryonic stem cells

(2008) Jianming Jiang et al.   NATURE CELL BIOLOGY

Assembling the lophotrochozoan (=spiralian) tree of life

(2008) G. Giribet   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES