Recent advances in mapping environmental microbial metabolisms through 13C isotopic fingerprints

A Global Investigation of the Bacillus subtilis Iron-Sparing Response Identifies Major Changes in Metabolism

(2012) G. T. Smaldone et al.   JOURNAL OF BACTERIOLOGY

Computational tools for metabolic engineering

(2012) Wilbert B. Copeland et al.   METABOLIC ENGINEERING

Global Network Reorganization During Dynamic Adaptations of Bacillus subtilis Metabolism

(2012) J. M. Buescher et al.   SCIENCE

Toward a Systemic Understanding of Listeria monocytogenes Metabolism during Infection

(2012) Thilo M. Fuchs et al.   Frontiers in Microbiology

Evaluation of isotope discrimination in 13C-based metabolic flux analysis

(2011) Xueyang Feng et al.   ANALYTICAL BIOCHEMISTRY

Subpopulation-Specific Metabolic Pathway Usage in Mixed Cultures as Revealed by Reporter Protein-Based13C Analysis

(2011) Martin Rühl et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Selective Utilization of Exogenous Amino Acids by Dehalococcoides ethenogenes Strain 195 and Its Effects on Growth and Dechlorination Activity

(2011) Wei-Qin Zhuang et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Novel sterol metabolic network ofTrypanosoma bruceiprocyclic and bloodstream forms

(2011) Craigen R. Nes et al.   BIOCHEMICAL JOURNAL

Collisional fragmentation of central carbon metabolites in LC-MS/MS increases precision of 13C metabolic flux analysis

(2011) Martin Rühl et al.   BIOTECHNOLOGY AND BIOENGINEERING

Fluxomers: a new approach for 13C metabolic flux analysis

(2011) Orr Srour et al.   BMC Systems Biology

Genome-scale reconstruction and system level investigation of the metabolic network of Methylobacterium extorquens AM1

(2011) Rémi Peyraud et al.   BMC Systems Biology

Identification and Characterization of a Re-Citrate Synthase in Dehalococcoides Strain CBDB1

(2011) E. Marco-Urrea et al.   JOURNAL OF BACTERIOLOGY

Characterization of Central Carbon Metabolism ofStreptococcus pneumoniaeby Isotopologue Profiling

(2011) Tobias Härtel et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

The Ethylmalonyl-CoA Pathway Is Used in Place of the Glyoxylate Cycle byMethylobacterium extorquensAM1 during Growth on Acetate

(2011) Kathrin Schneider et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Metabolite channeling and compartmentation in the human cell line AGE1.HN determined by 13C labeling experiments and 13C metabolic flux analysis

(2011) Jens Niklas et al.   JOURNAL OF BIOSCIENCE AND BIOENGINEERING

Dynamic metabolic flux analysis (DMFA): A framework for determining fluxes at metabolic non-steady state

(2011) Robert W. Leighty et al.   METABOLIC ENGINEERING

Mapping photoautotrophic metabolism with isotopically nonstationary 13C flux analysis

(2011) Jamey D. Young et al.   METABOLIC ENGINEERING

Capturing Metabolite Channeling in Metabolic Flux Phenotypes

(2011) T. C. R. Williams et al.   PLANT PHYSIOLOGY

The Tricarboxylic Acid Cycle in Cyanobacteria

(2011) S. Zhang et al.   SCIENCE

Calvin Cycle Flux, Pathway Constraints, and Substrate Oxidation State Together Determine the H2 Biofuel Yield in Photoheterotrophic Bacteria

(2011) J. B. McKinlay et al.   mBio

Fumarate Reductase Activity Maintains an Energized Membrane in Anaerobic Mycobacterium tuberculosis

(2011) Shinya Watanabe et al.   PLoS Pathogens

13C Metabolic Flux Analysis Identifies an Unusual Route for Pyruvate Dissimilation in Mycobacteria which Requires Isocitrate Lyase and Carbon Dioxide Fixation

(2011) Dany J. V. Beste et al.   PLoS Pathogens

Carbon Metabolic Pathways in Phototrophic Bacteria and Their Broader Evolutionary Implications

(2011) Kuo-Hsiang Tang et al.   Frontiers in Microbiology

Alternative Pathways of Carbon Dioxide Fixation: Insights into the Early Evolution of Life?

(2010) Georg Fuchs   Annual Review of Microbiology

Genome-scale metabolic modeling of a clostridial co-culture for consolidated bioprocessing

(2010) Fahimeh Salimi et al.   Biotechnology Journal

Resolving the TCA cycle and pentose-phosphate pathway of Clostridium acetobutylicum ATCC 824: Isotopomer analysis, in vitro activities and expression analysis

(2010) Scott B. Crown et al.   Biotechnology Journal

Metabolomics of Mycobacterium tuberculosis Reveals Compartmentalized Co-Catabolism of Carbon Substrates

(2010) Luiz Pedro S. de Carvalho et al.   CHEMISTRY & BIOLOGY

Pyruvate Carboxylase Plays a Crucial Role in Carbon Metabolism of Extra- and Intracellularly Replicating Listeria monocytogenes

(2010) J. Schar et al.   JOURNAL OF BACTERIOLOGY

Alternative Route for Glyoxylate Consumption during Growth on Two-Carbon Compounds by Methylobacterium extorquens AM1

(2010) Y. Okubo et al.   JOURNAL OF BACTERIOLOGY

Carbon Flow of Heliobacteria Is Related More toClostridiathan to the Green Sulfur Bacteria

(2010) Kuo-Hsiang Tang et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Metabolism of Pentose Sugars in the Hyperthermophilic ArchaeaSulfolobus solfataricusandSulfolobus acidocaldarius

(2010) Charlotte E. M. Nunn et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Metabolic Flux Analysis of the Mixotrophic Metabolisms in the Green Sulfur BacteriumChlorobaculum tepidum

(2010) Xueyang Feng et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

13C metabolic flux analysis for larger scale cultivation using gas chromatography-combustion-isotope ratio mass spectrometry

(2010) Yongbo Yuan et al.   METABOLIC ENGINEERING

Mixotrophic and photoheterotrophic metabolism in Cyanothece sp. ATCC 51142 under continuous light

(2010) X. Feng et al.   MICROBIOLOGY-SGM

Branched tricarboxylic acid metabolism in Plasmodium falciparum

(2010) Kellen L. Olszewski et al.   NATURE

Carbon metabolism of intracellular bacterial pathogens and possible links to virulence

(2010) Wolfgang Eisenreich et al.   NATURE REVIEWS MICROBIOLOGY

13C-Tracer and Gas Chromatography-Mass Spectrometry Analyses Reveal Metabolic Flux Distribution in the Oleaginous Microalga Chlorella protothecoides

(2010) W. Xiong et al.   PLANT PHYSIOLOGY

Carbon Metabolism of Enterobacterial Human Pathogens Growing in Epithelial Colorectal Adenocarcinoma (Caco-2) Cells

(2010) Andreas Götz et al.   PLoS One

Carbon dioxide fixation as a central redox cofactor recycling mechanism in bacteria

(2010) J. B. McKinlay et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Gluconeogenic carbon flow of tricarboxylic acid cycle intermediates is critical for Mycobacterium tuberculosis to establish and maintain infection

(2010) J. Marrero et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Characterization of the Central Metabolic Pathways in Thermoanaerobacter sp. Strain X514 via Isotopomer-Assisted Metabolite Analysis

(2009) X. Feng et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Central metabolism in Mycobacterium smegmatis during the transition from O2-rich to O2-poor conditions as studied by isotopomer-assisted metabolite analysis

(2009) Yinjie J. Tang et al.   BIOTECHNOLOGY LETTERS

Novel biological insights through metabolomics and 13C-flux analysis

(2009) Nicola Zamboni et al.   CURRENT OPINION IN MICROBIOLOGY

Investigation of Carbon Metabolism in "Dehalococcoides ethenogenes" Strain 195 by Use of Isotopomer and Transcriptomic Analyses

(2009) Y. J. Tang et al.   JOURNAL OF BACTERIOLOGY

OpenFLUX: efficient modelling software for 13C-based metabolic flux analysis

(2009) Lake-Ee Quek et al.   Microbial Cell Factories

Alternative isoleucine synthesis pathway in cyanobacterial species

(2009) B. Wu et al.   MICROBIOLOGY-SGM

Automatic policing of biochemical annotations using genomic correlations

(2009) Tzu-Lin Hsiao et al.   Nature Chemical Biology

13C-based metabolic flux analysis

(2009) Nicola Zamboni et al.   Nature Protocols

Profiling human gut bacterial metabolism and its kinetics using [U-13C]glucose and NMR

(2009) Albert A. de Graaf et al.   NMR IN BIOMEDICINE

Carbohydrate Metabolism and Carbon Fixation in Roseobacter denitrificans OCh114

(2009) Kuo-Hsiang Tang et al.   PLoS One

Demonstration of the ethylmalonyl-CoA pathway by using 13C metabolomics

(2009) R. Peyraud et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Identifying the missing steps of the autotrophic 3-hydroxypropionate CO2fixation cycle inChloroflexus aurantiacus

(2009) Jan Zarzycki et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Isotopomer Distributions in Amino Acids from a Highly Expressed Protein as a Proxy for Those from Total Protein

(2008) Afshan S. Shaikh et al.   ANALYTICAL CHEMISTRY

Directed Evolution of Methanococcus jannaschii Citramalate Synthase for Biosynthesis of 1-Propanol and 1-Butanol by Escherichia coli

(2008) S. Atsumi et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

13C labeling experiments at metabolic nonstationary conditions: An exploratory study

(2008) Sebastian Wahl et al.   BMC BIOINFORMATICS

Elucidation of an Alternate Isoleucine Biosynthesis Pathway in Geobacter sulfurreducens

(2008) C. Risso et al.   JOURNAL OF BACTERIOLOGY

Pathway identification combining metabolic flux and functional genomics analyses: Acetate and propionate activation by Corynebacterium glutamicum

(2008) Andrea Veit et al.   JOURNAL OF BIOTECHNOLOGY

Advances in analysis of microbial metabolic fluxes via13C isotopic labeling

(2008) Yinjie J. Tang et al.   MASS SPECTROMETRY REVIEWS

Biosynthesis of aspergiolide A, a novel antitumor compound by a marine-derived fungus Aspergillus glaucus via the polyketide pathway

(2008) Kejing Tao et al.   TETRAHEDRON LETTERS

An elementary metabolite unit (EMU) based method of isotopically nonstationary flux analysis

(2007) Jamey D. Young et al.   BIOTECHNOLOGY AND BIOENGINEERING

Metabolic flux analysis inEscherichia coli by integrating isotopic dynamic and isotopic stationary13C labeling data

(2007) Jochen Schaub et al.   BIOTECHNOLOGY AND BIOENGINEERING