Genome Wide Nucleosome Mapping for HSV-1 Shows Nucleosomes Are Deposited at Preferred Positions during Lytic Infection

Structure-based Analysis of DNA Sequence Patterns Guiding Nucleosome Positioningin vitro

(2014) Feng Cui et al.   JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS

The Scc2–Scc4 complex acts in sister chromatid cohesion and transcriptional regulation by maintaining nucleosome-free regions

(2014) Lidia Lopez-Serra et al.   NATURE GENETICS

DNA bridging and looping by HMO1 provides a mechanism for stabilizing nucleosome-free chromatin

(2014) Divakaran Murugesapillai et al.   NUCLEIC ACIDS RESEARCH

SWR-C and INO80 Chromatin Remodelers Recognize Nucleosome-free Regions Near +1 Nucleosomes

(2013) Kuangyu Yen et al.   CELL

Nucleosome maps of the human cytomegalovirus genome reveal a temporal switch in chromatin organization linked to a major IE protein

(2013) E. Zalckvar et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

DNA structure, nucleosome placement and chromatin remodelling: a perspective

(2012) Andrew A. Travers et al.   BIOCHEMICAL SOCIETY TRANSACTIONS

An Atlas of the Epstein-Barr Virus Transcriptome and Epigenome Reveals Host-Virus Regulatory Interactions

(2012) Aaron Arvey et al.   Cell Host & Microbe

CpG islands and GC content dictate nucleosome depletion in a transcription-independent manner at mammalian promoters

(2012) R. Fenouil et al.   GENOME RESEARCH

Nucleosome Positioning Pattern Derived from Oligonucleotide Compositions of Genomic Sequences

(2012) Alexandra E. Rapoport et al.   JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS

Chromatin Assembly on Herpes Simplex Virus 1 DNA Early during a Lytic Infection Is Asf1a Dependent

(2012) J. Oh et al.   JOURNAL OF VIROLOGY

Herpes Simplex Virus 1 DNA Is in Unstable Nucleosomes throughout the Lytic Infection Cycle, and the Instability of the Nucleosomes Is Independent of DNA Replication

(2012) J. J. Lacasse et al.   JOURNAL OF VIROLOGY

Roles of the Nuclear Lamina in Stable Nuclear Association and Assembly of a Herpesviral Transactivator Complex on Viral Immediate-Early Genes

(2012) L. Silva et al.   mBio

Controls of Nucleosome Positioning in the Human Genome

(2012) Daniel J. Gaffney et al.   PLoS Genetics

EBV Latency Types Adopt Alternative Chromatin Conformations

(2011) Italo Tempera et al.   PLoS Pathogens

Chromatin dynamics during herpes simplex virus-1 lytic infection

(2010) Brandon J. Placek et al.   Biochimica et Biophysica Acta-Gene Regulatory Mechanisms

Epigenetic regulation of latent HSV-1 gene expression

(2010) David C. Bloom et al.   Biochimica et Biophysica Acta-Gene Regulatory Mechanisms

Nucleosomes are preferentially positioned at exons in somatic and sperm cells

(2010) Satu Nahkuri et al.   CELL CYCLE

Evidence against a genomic code for nucleosome positioning Reply to “Nucleosome sequence preferences influence in vivo nucleosome organization”

(2010) Yong Zhang et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

Nucleosome sequence preferences influence in vivo nucleosome organization

(2010) Noam Kaplan et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

Transcriptional coactivator HCF-1 couples the histone chaperone Asf1b to HSV-1 DNA replication components

(2010) H. Peng et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The Epigenetic Landscape of Latent Kaposi Sarcoma-Associated Herpesvirus Genomes

(2010) Thomas Günther et al.   PLoS Pathogens

Histones, histone chaperones and nucleosome assembly

(2010) Rebecca J. Burgess et al.   Protein & Cell

A novel mechanism of epigenetic regulation: Nucleosome-space occupancy

(2009) Peng Cui et al.   BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS

Role of chromatin during herpesvirus infections

(2009) Sebla B. Kutluay et al.   BIOCHIMICA ET BIOPHYSICA ACTA-GENERAL SUBJECTS

A canonical promoter organization of the transcription machinery and its regulators in the Saccharomyces genome

(2009) B. J. Venters et al.   GENOME RESEARCH

Herpes Simplex Virus VP16, but Not ICP0, Is Required To Reduce Histone Occupancy and Enhance Histone Acetylation on Viral Genomes in U2OS Osteosarcoma Cells

(2009) M. H. Hancock et al.   JOURNAL OF VIROLOGY

During Lytic Infections, Herpes Simplex Virus Type 1 DNA Is in Complexes with the Properties of Unstable Nucleosomes

(2009) J. J. Lacasse et al.   JOURNAL OF VIROLOGY

Inhibition of the histone demethylase LSD1 blocks α-herpesvirus lytic replication and reactivation from latency

(2009) Yu Liang et al.   NATURE MEDICINE

Nucleosome positioning and gene regulation: advances through genomics

(2009) Cizhong Jiang et al.   NATURE REVIEWS GENETICS

Intrinsic histone-DNA interactions are not the major determinant of nucleosome positions in vivo

(2009) Yong Zhang et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

What controls nucleosome positions?

(2009) Eran Segal et al.   TRENDS IN GENETICS

Prediction and analysis of nucleosome exclusion regions in the human genome

(2008) Ahmed Radwan et al.   BMC GENOMICS

Sequence-dependent Nucleosome Positioning

(2008) Ho-Ryun Chung et al.   JOURNAL OF MOLECULAR BIOLOGY

The Histone Variant H3.3 Regulates Gene Expression during Lytic Infection with Herpes Simplex Virus Type 1

(2008) B. J. Placek et al.   JOURNAL OF VIROLOGY

Temporal Dynamics of Cytomegalovirus Chromatin Assembly in Productively Infected Human Cells

(2008) A. Nitzsche et al.   JOURNAL OF VIROLOGY

Herpes Simplex Virus ICP0 Promotes both Histone Removal and Acetylation on Viral DNA during Lytic Infection

(2008) A. R. Cliffe et al.   JOURNAL OF VIROLOGY

Chromatin control of herpes simplex virus lytic and latent infection

(2008) David M. Knipe et al.   NATURE REVIEWS MICROBIOLOGY

Distinct Modes of Regulation by Chromatin Encoded through Nucleosome Positioning Signals

(2008) Yair Field et al.   PLoS Computational Biology