Regional Differences in the Accumulation of SNPs on the Male-Specific Portion of the Human Y Chromosome Replicate Autosomal Patterns: Implications for Genetic Dating

A recent bottleneck of Y chromosome diversity coincides with a global change in culture

(2015) Monika Karmin et al.   GENOME RESEARCH

Massive migration from the steppe was a source for Indo-European languages in Europe

(2015) Wolfgang Haak et al.   NATURE

Population genomics of Bronze Age Eurasia

(2015) Morten E. Allentoft et al.   NATURE

The effects of chromatin organization on variation in mutation rates in the genome

(2015) Kateryna D. Makova et al.   NATURE REVIEWS GENETICS

Large-scale recent expansion of European patrilineages shown by population resequencing

(2015) Chiara Batini et al.   Nature Communications

Determinants of Mutation Rate Variation in the Human Germline

(2014) Laure Ségurel et al.   Annual Review of Genomics and Human Genetics

Reply to Mendez et al: the ‘extremely ancient’ chromosome that still isn’t

(2014) Eran Elhaik et al.   EUROPEAN JOURNAL OF HUMAN GENETICS

The phylogenetic and geographic structure of Y-chromosome haplogroup R1a

(2014) Peter A Underhill et al.   EUROPEAN JOURNAL OF HUMAN GENETICS

An unbiased resource of novel SNP markers provides a new chronology for the human Y chromosome and reveals a deep phylogenetic structure in Africa

(2014) R. Scozzari et al.   GENOME RESEARCH

Inter- and Intraspecies Phylogenetic Analyses Reveal Extensive X–Y Gene Conversion in the Evolution of Gametologous Sequences of Human Sex Chromosomes

(2014) Beniamino Trombetta et al.   MOLECULAR BIOLOGY AND EVOLUTION

The Y-Chromosome Tree Bursts into Leaf: 13,000 High-Confidence SNPs Covering the Majority of Known Clades

(2014) P. Hallast et al.   MOLECULAR BIOLOGY AND EVOLUTION

Ancient human genomes suggest three ancestral populations for present-day Europeans

(2014) Iosif Lazaridis et al.   NATURE

Genome sequence of a 45,000-year-old modern human from western Siberia

(2014) Qiaomei Fu et al.   NATURE

Natural Selection Reduced Diversity on Human Y Chromosomes

(2014) Melissa A. Wilson Sayres et al.   PLoS Genetics

An African American Paternal Lineage Adds an Extremely Ancient Root to the Human Y Chromosome Phylogenetic Tree

(2013) Fernando L. Mendez et al.   AMERICAN JOURNAL OF HUMAN GENETICS

Purifying Selection Causes Widespread Distortions of Genealogical Structure on the Human X Chromosome

(2013) B. O'Fallon   GENETICS

The influence of genomic context on mutation patterns in the human genome inferred from rare variants

(2013) V. M. Schaibley et al.   GENOME RESEARCH

Seeing the Wood for the Trees: A Minimal Reference Phylogeny for the Human Y Chromosome

(2013) Mannis van Oven et al.   HUMAN MUTATION

The First Modern Human Dispersals across Africa

(2013) Teresa Rito et al.   PLoS One

Low-Pass DNA Sequencing of 1200 Sardinians Reconstructs European Y-Chromosome Phylogeny

(2013) P. Francalacci et al.   SCIENCE

Sequencing Y Chromosomes Resolves Discrepancy in Time to Common Ancestor of Males Versus Females

(2013) G. D. Poznik et al.   SCIENCE

The Geography of Recent Genetic Ancestry across Europe

(2013) Peter Ralph et al.   PLOS BIOLOGY

Differential Relationship of DNA Replication Timing to Different Forms of Human Mutation and Variation

(2012) Amnon Koren et al.   AMERICAN JOURNAL OF HUMAN GENETICS

Whole-Genome Sequencing in Autism Identifies Hot Spots for De Novo Germline Mutation

(2012) Jacob J. Michaelson et al.   CELL

A calibrated human Y-chromosomal phylogeny based on resequencing

(2012) W. Wei et al.   GENOME RESEARCH

Rate of de novo mutations and the importance of father’s age to disease risk

(2012) Augustine Kong et al.   NATURE

Recent Explosive Human Population Growth Has Resulted in an Excess of Rare Genetic Variants

(2012) A. Keinan et al.   SCIENCE

The Expansion of mtDNA Haplogroup L3 within and out of Africa

(2011) P. Soares et al.   MOLECULAR BIOLOGY AND EVOLUTION

MEGA5: Molecular Evolutionary Genetics Analysis Using Maximum Likelihood, Evolutionary Distance, and Maximum Parsimony Methods

(2011) K. Tamura et al.   MOLECULAR BIOLOGY AND EVOLUTION

The Bantu expansion revisited: a new analysis of Y chromosome variation in Central Western Africa

(2011) VALERIA MONTANO et al.   MOLECULAR ECOLOGY

About the X-to-Y Gene Conversion Rate

(2010) Fulvio Cruciani et al.   AMERICAN JOURNAL OF HUMAN GENETICS

Direct Measure of the De Novo Mutation Rate in Autism and Schizophrenia Cohorts

(2010) Philip Awadalla et al.   AMERICAN JOURNAL OF HUMAN GENETICS

A major Y-chromosome haplogroup R1b Holocene era founder effect in Central and Western Europe

(2010) Natalie M Myres et al.   EUROPEAN JOURNAL OF HUMAN GENETICS

Chimpanzee and human Y chromosomes are remarkably divergent in structure and gene content

(2010) Jennifer F. Hughes et al.   NATURE

Analysis of Genetic Inheritance in a Family Quartet by Whole-Genome Sequencing

(2010) J. C. Roach et al.   SCIENCE

A Predominantly Neolithic Origin for European Paternal Lineages

(2010) Patricia Balaresque et al.   PLOS BIOLOGY

Remarkably Little Variation in Proteins Encoded by the Y Chromosome's Single-Copy Genes, Implying Effective Purifying Selection

(2009) Steve Rozen et al.   AMERICAN JOURNAL OF HUMAN GENETICS

Gene Conversion between the X Chromosome and the Male-Specific Region of the Y Chromosome at a Translocation Hotspot

(2009) Zoë H. Rosser et al.   AMERICAN JOURNAL OF HUMAN GENETICS

Separating the post-Glacial coancestry of European and Asian Y chromosomes within haplogroup R1a

(2009) Peter A Underhill et al.   EUROPEAN JOURNAL OF HUMAN GENETICS

Footprints of X-to-Y Gene Conversion in Recent Human Evolution

(2009) B. Trombetta et al.   MOLECULAR BIOLOGY AND EVOLUTION

Human mutation rate associated with DNA replication timing

(2009) John A Stamatoyannopoulos et al.   NATURE GENETICS

Population stability, cooperation, and the invasibility of the human species

(2009) M. J. Hamilton et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Cryptic Variation in the Human Mutation Rate

(2009) Alan Hodgkinson et al.   PLOS BIOLOGY

ReplicationDomain: a visualization tool and comparative database for genome-wide replication timing data

(2008) Nodin Weddington et al.   BMC BIOINFORMATICS

Characterizing the Time Dependency of Human Mitochondrial DNA Mutation Rate Estimates

(2008) B. M. Henn et al.   MOLECULAR BIOLOGY AND EVOLUTION

Mutations of Different Molecular Origins Exhibit Contrasting Patterns of Regional Substitution Rate Variation

(2008) Navin Elango et al.   PLoS Computational Biology