Large-scale recent expansion of European patrilineages shown by population resequencing

The ‘extremely ancient’ chromosome that isn’t: a forensic bioinformatic investigation of Albert Perry’s X-degenerate portion of the Y chromosome

(2014) Eran Elhaik et al.   EUROPEAN JOURNAL OF HUMAN GENETICS

An unbiased resource of novel SNP markers provides a new chronology for the human Y chromosome and reveals a deep phylogenetic structure in Africa

(2014) R. Scozzari et al.   GENOME RESEARCH

The Y-Chromosome Tree Bursts into Leaf: 13,000 High-Confidence SNPs Covering the Majority of Known Clades

(2014) P. Hallast et al.   MOLECULAR BIOLOGY AND EVOLUTION

Ancient human genomes suggest three ancestral populations for present-day Europeans

(2014) Iosif Lazaridis et al.   NATURE

Derived immune and ancestral pigmentation alleles in a 7,000-year-old Mesolithic European

(2014) Iñigo Olalde et al.   NATURE

Genome sequence of a 45,000-year-old modern human from western Siberia

(2014) Qiaomei Fu et al.   NATURE

The impact of whole-genome sequencing on the reconstruction of human population history

(2014) Krishna R. Veeramah et al.   NATURE REVIEWS GENETICS

A Genetic Atlas of Human Admixture History

(2014) G. Hellenthal et al.   SCIENCE

An African American Paternal Lineage Adds an Extremely Ancient Root to the Human Y Chromosome Phylogenetic Tree

(2013) Fernando L. Mendez et al.   AMERICAN JOURNAL OF HUMAN GENETICS

AMY-tree: an algorithm to use whole genome SNP calling for Y chromosomal phylogenetic applications

(2013) Anneleen Van Geystelen et al.   BMC GENOMICS

Updating the Y-chromosomal phylogenetic tree for forensic applications based on whole genome SNPs

(2013) A. Van Geystelen et al.   Forensic Science International-Genetics

Ancient DNA Reveals Key Stages in the Formation of Central European Mitochondrial Genetic Diversity

(2013) G. Brandt et al.   SCIENCE

Low-Pass DNA Sequencing of 1200 Sardinians Reconstructs European Y-Chromosome Phylogeny

(2013) P. Francalacci et al.   SCIENCE

Sequencing Y Chromosomes Resolves Discrepancy in Time to Common Ancestor of Males Versus Females

(2013) G. D. Poznik et al.   SCIENCE

Robust Demographic Inference from Genomic and SNP Data

(2013) Laurent Excoffier et al.   PLoS Genetics

An integrated map of genetic variation from 1,092 human genomes

(2012)   NATURE

The variant call format and VCFtools

(2011) P. Danecek et al.   BIOINFORMATICS

People of the British Isles: preliminary analysis of genotypes and surnames in a UK-control population

(2011) Bruce Winney et al.   EUROPEAN JOURNAL OF HUMAN GENETICS

Skyline-plot methods for estimating demographic history from nucleotide sequences

(2011) SIMON Y. W. HO et al.   Molecular Ecology Resources

A framework for variation discovery and genotyping using next-generation DNA sequencing data

(2011) Mark A DePristo et al.   NATURE GENETICS

The peopling of Europe and the cautionary tale of Y chromosome lineage R-M269

(2011) G. B. J. Busby et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Stampy: A statistical algorithm for sensitive and fast mapping of Illumina sequence reads

(2010) G. Lunter et al.   GENOME RESEARCH

ABC as a flexible framework to estimate demography over space and time: some cons, many pros

(2010) G. BERTORELLE et al.   MOLECULAR ECOLOGY

Arlequin suite ver 3.5: a new series of programs to perform population genetics analyses under Linux and Windows

(2010) LAURENT EXCOFFIER et al.   Molecular Ecology Resources

Integrating common and rare genetic variation in diverse human populations

(2010)   NATURE

A Predominantly Neolithic Origin for European Paternal Lineages

(2010) Patricia Balaresque et al.   PLOS BIOLOGY

Human Y Chromosome Base-Substitution Mutation Rate Measured by Direct Sequencing in a Deep-Rooting Pedigree

(2009) Yali Xue et al.   CURRENT BIOLOGY

BayesCall: A model-based base-calling algorithm for high-throughput short-read sequencing

(2009) W.-C. Kao et al.   GENOME RESEARCH

Human Genome Sequencing Using Unchained Base Reads on Self-Assembling DNA Nanoarrays

(2009) R. Drmanac et al.   SCIENCE

Correlation between Genetic and Geographic Structure in Europe

(2008) Oscar Lao et al.   CURRENT BIOLOGY

New binary polymorphisms reshape and increase resolution of the human Y chromosomal haplogroup tree

(2008) T. M. Karafet et al.   GENOME RESEARCH

Genes mirror geography within Europe

(2008) John Novembre et al.   NATURE