Rhizosphere bacteria and fungi associated with plant growth in soils of three replanted apple orchards

Pyrosequencing technology reveals the impact of different manure doses on the bacterial community in apple rhizosphere soil

(2014) Jian Sun et al.   APPLIED SOIL ECOLOGY

Selection on soil microbiomes reveals reproducible impacts on plant function

(2014) Kevin Panke-Buisse et al.   ISME Journal

Linking Soil Biotic and Abiotic Factors to Apple Replant Disease: a Greenhouse Approach

(2014) Manuela Spath et al.   JOURNAL OF PHYTOPATHOLOGY

Comparison and Validation of Some ITS Primer Pairs Useful for Fungal Metabarcoding Studies

(2014) Michiel Op De Beeck et al.   PLoS One

Illumina Amplicon Sequencing of 16S rRNA Tag Reveals Bacterial Community Development in the Rhizosphere of Apple Nurseries at a Replant Disease Site and a New Planting Site

(2014) Jian Sun et al.   PLoS One

Similar Processes but Different Environmental Filters for Soil Bacterial and Fungal Community Composition Turnover on a Broad Spatial Scale

(2014) Nicolas Chemidlin Prévost-Bouré et al.   PLoS One

Role of Bacterial Communities in the Natural Suppression of Rhizoctonia solani Bare Patch Disease of Wheat (Triticum aestivum L.)

(2013) Chuntao Yin et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Relationship between root-endophytic microbial communities and replant disease in specialized apple growing areas in Europe

(2013) L.M. Manici et al.   APPLIED SOIL ECOLOGY

Towards a unified paradigm for sequence-based identification of fungi

(2013) Urmas Kõljalg et al.   MOLECULAR ECOLOGY

Manure Refinement Affects Apple Rhizosphere Bacterial Community Structure: A Study in Sandy Soil

(2013) Qiang Zhang et al.   PLoS One

Apple Replant Disease: Role of Microbial Ecology in Cause and Control

(2012) Mark Mazzola et al.   Annual Review of Phytopathology

Pyrosequencing-Derived Bacterial, Archaeal, and Fungal Diversity of Spacecraft Hardware Destined for Mars

(2012) Myron T. La Duc et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Plant secondary metabolite-induced shifts in bacterial community structure and degradative ability in contaminated soil

(2012) Ondrej Uhlik et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Endophytic fungal association via gibberellins and indole acetic acid can improve plant growth under abiotic stress: an example of Paecilomyces formosus LHL10

(2012) Abdul Khan et al.   BMC MICROBIOLOGY

A framework for human microbiome research

(2012)   NATURE

The SILVA ribosomal RNA gene database project: improved data processing and web-based tools

(2012) Christian Quast et al.   NUCLEIC ACIDS RESEARCH

Planting in the ‘inter-row’ to overcome replant disease in apple orchards: a study on the effectiveness of the practice based on microbial indicators

(2012) Markus Kelderer et al.   PLANT AND SOIL

Evaluation of apple replant problems based on different soil disinfection treatments—links to soil microbial community structure?

(2012) Bunlong Yim et al.   PLANT AND SOIL

Correlations between Root-Associated Microorganisms and Peach Replant Disease Symptoms in a California Soil

(2012) Jiue-in Yang et al.   PLoS One

Control of a wide range of storage rots in naturally infected apples by hot-water dipping and rinsing

(2012) Peter Maxin et al.   POSTHARVEST BIOLOGY AND TECHNOLOGY

Protection of Arabidopsis thaliana against Leaf-Pathogenic Pseudomonas syringae by Sphingomonas Strains in a Controlled Model System

(2011) Gerd Innerebner et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Distinct Microbial Communities within the Endosphere and Rhizosphere of Populus deltoides Roots across Contrasting Soil Types

(2011) Neil R. Gottel et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Deciphering the Rhizosphere Microbiome for Disease-Suppressive Bacteria

(2011) R. Mendes et al.   SCIENCE

A multi-phasic approach reveals that apple replant disease is caused by multiple biological agents, with some agents acting synergistically

(2011) Yared Tesfai Tewoldemedhin et al.   SOIL BIOLOGY & BIOCHEMISTRY

Delimitation of Neonectria and Cylindrocarpon (Nectriaceae, Hypocreales, Ascomycota) and related genera with Cylindrocarpon-like anamorphs

(2011) P. Chaverri et al.   STUDIES IN MYCOLOGY

A systematic assessment of automated ribosomal intergenic spacer analysis (ARISA) as a tool for estimating bacterial richness

(2010) Amir Kovacs et al.   RESEARCH IN MICROBIOLOGY

Introducing mothur: Open-Source, Platform-Independent, Community-Supported Software for Describing and Comparing Microbial Communities

(2009) P. D. Schloss et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Fungal endophyte diversity in coffee plants from Colombia, Hawai'i, Mexico and Puerto Rico

(2009) Fernando E. Vega et al.   Fungal Ecology

454 Pyrosequencing analyses of forest soils reveal an unexpectedly high fungal diversity

(2009) M. Buée et al.   NEW PHYTOLOGIST

Advances in the use of terminal restriction fragment length polymorphism (T-RFLP) analysis of 16S rRNA genes to characterize microbial communities

(2008) Ursel M. E. Schütte et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Plant growth promotion and Penicillium citrinum

(2008) Sumera Khan et al.   BMC MICROBIOLOGY

Long-term orchard groundcover management systems affect soil microbial communities and apple replant disease severity

(2008) Angelika St. Laurent et al.   PLANT AND SOIL