Optimizing information flow in small genetic networks. IV. Spatial coupling

Optimal Census by Quorum Sensing

(2015) Thibaud Taillefumier et al.   PLoS Computational Biology

Mid-Embryo Patterning and Precision in Drosophila Segmentation: Krüppel Dual Regulation of hunchback

(2015) David M. Holloway et al.   PLoS One

The Berg-Purcell Limit Revisited

(2014) Kazunari Kaizu et al.   BIOPHYSICAL JOURNAL

Noise and Information Transmission in Promoters with Multiple Internal States

(2014) Georg Rieckh et al.   BIOPHYSICAL JOURNAL

Coordination of Patterning and Growth by the Morphogen DPP

(2014) Simon Restrepo et al.   CURRENT BIOLOGY

Maternal Origins of Developmental Reproducibility

(2014) Mariela D. Petkova et al.   CURRENT BIOLOGY

Positional Information, Positional Error, and Readout Precision in Morphogenesis: A Mathematical Framework

(2014) G. Tka ik et al.   GENETICS

Robust and precise morphogen-mediated patterning: trade-offs, constraints and mechanisms

(2014) W.-C. Lo et al.   Journal of the Royal Society Interface

Lower bound on the precision of transcriptional regulation and why facilitated diffusion can reduce noise in gene expression

(2014) Joris Paijmans et al.   PHYSICAL REVIEW E

Morphogenesis at criticality

(2014) D. Krotov et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Noise in biology

(2014) Lev S Tsimring   REPORTS ON PROGRESS IN PHYSICS

Accurate information transmission through dynamic biochemical signaling networks

(2014) J. Selimkhanov et al.   SCIENCE

Precise Developmental Gene Expression Arises from Globally Stochastic Transcriptional Activity

(2013) Shawn C. Little et al.   CELL

Quantitative Imaging of Transcription in Living Drosophila Embryos Links Polymerase Activity to Patterning

(2013) Hernan G. Garcia et al.   CURRENT BIOLOGY

Drosophila blastoderm patterning

(2013) Johannes Jaeger et al.   CURRENT OPINION IN GENETICS & DEVELOPMENT

Accurate measurements of dynamics and reproducibility in small genetic networks

(2013) J. O. Dubuis et al.   Molecular Systems Biology

Mapping the fine structure of a eukaryotic promoter input-output function

(2013) Arun S Rajkumar et al.   NATURE GENETICS

Network Characteristics of Collective Chemosensing

(2013) Bo Sun et al.   PHYSICAL REVIEW LETTERS

Positional information, in bits

(2013) J. O. Dubuis et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Temporal dynamics, spatial range, and transcriptional interpretation of the Dorsal morphogen gradient

(2012) Christine A Rushlow et al.   CURRENT OPINION IN GENETICS & DEVELOPMENT

Encoding and decoding of positional information in morphogen-dependent patterning

(2012) Ken-ichi Hironaka et al.   CURRENT OPINION IN GENETICS & DEVELOPMENT

Noise drives sharpening of gene expression boundaries in the zebrafish hindbrain

(2012) Lei Zhang et al.   Molecular Systems Biology

Optimizing information flow in small genetic networks. III. A self-interacting gene

(2012) Gašper Tkačik et al.   PHYSICAL REVIEW E

Stochastic branching-diffusion models for gene expression

(2012) D. Cottrell et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Spatial-temporal dynamics of collective chemosensing

(2012) B. Sun et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Mutual Repression Enhances the Steepness and Precision of Gene Expression Boundaries

(2012) Thomas R. Sokolowski et al.   PLoS Computational Biology

Collective oscillations in developing cells: Insights from simple systems

(2011) Keita Kamino et al.   DEVELOPMENT GROWTH & DIFFERENTIATION

Information transmission in genetic regulatory networks: a review

(2011) Gašper Tkačik et al.   JOURNAL OF PHYSICS-CONDENSED MATTER

Gene Expression Noise in Spatial Patterning: hunchback Promoter Structure Affects Noise Amplitude and Distribution in Drosophila Segmentation

(2011) David M. Holloway et al.   PLoS Computational Biology

The gap gene network

(2010) Johannes Jaeger   CELLULAR AND MOLECULAR LIFE SCIENCES

Positional information and patterning revisited

(2010) Lewis Wolpert   JOURNAL OF THEORETICAL BIOLOGY

Mutual information in time-varying biochemical systems

(2010) Filipe Tostevin et al.   PHYSICAL REVIEW E

Effect of feedback on the fidelity of information transmission of time-varying signals

(2010) Wiet Hendrik de Ronde et al.   PHYSICAL REVIEW E

Optimizing information flow in small genetic networks. II. Feed-forward interactions

(2010) Aleksandra M. Walczak et al.   PHYSICAL REVIEW E

Information-Optimal Transcriptional Response to Oscillatory Driving

(2010) Andrew Mugler et al.   PHYSICAL REVIEW LETTERS

The Onset of Collective Behavior in Social Amoebae

(2010) T. Gregor et al.   SCIENCE

Diffusion, dimensionality, and noise in transcriptional regulation

(2009) Gašper Tkačik et al.   PHYSICAL REVIEW E

Optimizing information flow in small genetic networks

(2009) Gašper Tkačik et al.   PHYSICAL REVIEW E

Mutual Information between Input and Output Trajectories of Biochemical Networks

(2009) Filipe Tostevin et al.   PHYSICAL REVIEW LETTERS

Role of Spatial Averaging in the Precision of Gene Expression Patterns

(2009) Thorsten Erdmann et al.   PHYSICAL REVIEW LETTERS

Morphogen Gradient Formation

(2009) O. Wartlick et al.   Cold Spring Harbor Perspectives in Biology

Canalization of Gene Expression in the Drosophila Blastoderm by Gap Gene Cross Regulation

(2009) Manu et al.   PLOS BIOLOGY

Precision of the Dpp gradient

(2008) T. Bollenbach et al.   DEVELOPMENT

Information capacity of genetic regulatory elements

(2008) Gašper Tkačik et al.   PHYSICAL REVIEW E

The Role of Input Noise in Transcriptional Regulation

(2008) Gašper Tkačik et al.   PLoS One

Information flow and optimization in transcriptional regulation

(2008) G. Tkacik et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA