Cofilin reduces the mechanical properties of actin filaments: approach with coarse-grained methods

Relationship between disease-specific structures of amyloid fibrils and their mechanical properties

(2013) Gwonchan Yoon et al.   APPLIED PHYSICS LETTERS

GROMACS 4.5: a high-throughput and highly parallel open source molecular simulation toolkit

(2013) Sander Pronk et al.   BIOINFORMATICS

Molecular Origins of Cofilin-Linked Changes in Actin Filament Mechanics

(2013) Jun Fan et al.   JOURNAL OF MOLECULAR BIOLOGY

Functions of cofilin in cell locomotion and invasion

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Quantitative analysis of extension–torsion coupling of actin filaments

(2012) Shinji Matsushita et al.   BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS

FlexE: Using Elastic Network Models to Compare Models of Protein Structure

(2012) Alberto Perez et al.   Journal of Chemical Theory and Computation

Mechanical Characterization of Amyloid Fibrils Using Coarse-Grained Normal Mode Analysis

(2011) Gwonchan Yoon et al.   ADVANCED FUNCTIONAL MATERIALS

Cofilin-Linked Changes in Actin Filament Flexibility Promote Severing

(2011) Brannon R. McCullough et al.   BIOPHYSICAL JOURNAL

Cofilin Tunes the Nucleotide State of Actin Filaments and Severs at Bare and Decorated Segment Boundaries

(2011) Cristian Suarez et al.   CURRENT BIOLOGY

Effect of tensile force on the mechanical behavior of actin filaments

(2011) Shinji Matsushita et al.   JOURNAL OF BIOMECHANICS

Nanomechanics of functional and pathological amyloid materials

(2011) Tuomas P. J. Knowles et al.   Nature Nanotechnology

Remodeling of actin filaments by ADF/cofilin proteins

(2011) V. E. Galkin et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Alzheimer's Aβ(1-40) Amyloid Fibrils Feature Size-Dependent Mechanical Properties

(2010) Zhiping Xu et al.   BIOPHYSICAL JOURNAL

Evaluation of extensional and torsional stiffness of single actin filaments by molecular dynamics analysis

(2010) Shinji Matsushita et al.   JOURNAL OF BIOMECHANICS

Multiscale network model for large protein dynamics

(2010) Hyoseon Jang et al.   JOURNAL OF CHEMICAL PHYSICS

Domain decomposition-based structural condensation of large protein structures for understanding their conformational dynamics

(2010) Jae In Kim et al.   JOURNAL OF COMPUTATIONAL CHEMISTRY

Validating and improving elastic network models with molecular dynamics simulations

(2010) Tod D. Romo et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

Polarizable Water Model for the Coarse-Grained MARTINI Force Field

(2010) Semen O. Yesylevskyy et al.   PLoS Computational Biology

Large Protein Dynamics Described by Hierarchical-Component Mode Synthesis

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Allosteric Transitions of Supramolecular Systems Explored by Network Models: Application to Chaperonin GroEL

(2009) Zheng Yang et al.   PLoS Computational Biology

Conformational Transition Pathways Explored by Monte Carlo Simulation Integrated with Collective Modes

(2008) Nigar Kantarci-Carsibasi et al.   BIOPHYSICAL JOURNAL

Mathematical Models and Simulations of Cellular Processes Based on Actin Filaments

(2008) Thomas D. Pollard et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

The MARTINI Coarse-Grained Force Field: Extension to Proteins

(2008) Luca Monticelli et al.   Journal of Chemical Theory and Computation

GROMACS 4:  Algorithms for Highly Efficient, Load-Balanced, and Scalable Molecular Simulation

(2008) Berk Hess et al.   Journal of Chemical Theory and Computation

Cofilin Increases the Bending Flexibility of Actin Filaments: Implications for Severing and Cell Mechanics

(2008) Brannon R. McCullough et al.   JOURNAL OF MOLECULAR BIOLOGY