The Phylogenomic Roots of Modern Biochemistry: Origins of Proteins, Cofactors and Protein Biosynthesis
Published 2011 View Full Article
- Home
- Publications
- Publication Search
- Publication Details
Title
The Phylogenomic Roots of Modern Biochemistry: Origins of Proteins, Cofactors and Protein Biosynthesis
Authors
Keywords
-
Journal
JOURNAL OF MOLECULAR EVOLUTION
Volume 74, Issue 1-2, Pages 1-34
Publisher
Springer Nature
Online
2011-12-31
DOI
10.1007/s00239-011-9480-1
References
Ask authors/readers for more resources
Related references
Note: Only part of the references are listed.- The proteomic complexity and rise of the primordial ancestor of diversified life
- (2011) Kyung Mo Kim et al. BMC EVOLUTIONARY BIOLOGY
- Protein Folding Absent Selection
- (2011) Thomas H. LaBean et al. Genes
- Current understanding of fatty acid biosynthesis and the acyl carrier protein
- (2010) David I. Chan et al. BIOCHEMICAL JOURNAL
- Exploring the interplay of stability and function in protein evolution
- (2010) Gustavo Caetano-Anollés et al. BIOESSAYS
- The RNA dreamtime
- (2010) Charles G. Kurland BIOESSAYS
- The CoFactor database: organic cofactors in enzyme catalysis
- (2010) Julia D. Fischer et al. BIOINFORMATICS
- Predicted class-I aminoacyl tRNA synthetase-like proteins in non-ribosomal peptide synthesis
- (2010) L Aravind et al. Biology Direct
- The ancient history of the structure of ribonuclease P and the early origins of Archaea
- (2010) Feng-Jie Sun et al. BMC BIOINFORMATICS
- Proteome Evolution and the Metabolic Origins of Translation and Cellular Life
- (2010) Derek Caetano-Anollés et al. JOURNAL OF MOLECULAR EVOLUTION
- Emergence and Evolution of Modern Molecular Functions Inferred from Phylogenomic Analysis of Ontological Data
- (2010) K. M. Kim et al. MOLECULAR BIOLOGY AND EVOLUTION
- Evolution of Outer Membrane β-Barrels from an Ancestral ββ Hairpin
- (2010) M. Remmert et al. MOLECULAR BIOLOGY AND EVOLUTION
- A Universal Molecular Clock of Protein Folds and Its Power in Tracing the Early History of Aerobic Metabolism and Planet Oxygenation
- (2010) Minglei Wang et al. MOLECULAR BIOLOGY AND EVOLUTION
- A phylogenetically based transcriptome age index mirrors ontogenetic divergence patterns
- (2010) Tomislav Domazet-Lošo et al. NATURE
- The structure and mechanism of the Mycobacterium tuberculosis cyclodityrosine synthetase
- (2010) Matthew W Vetting et al. Nature Chemical Biology
- New functions of aminoacyl-tRNA synthetases beyond translation
- (2010) Min Guo et al. NATURE REVIEWS MOLECULAR CELL BIOLOGY
- Which Way to Life?
- (2010) Antonio Lazcano ORIGINS OF LIFE AND EVOLUTION OF BIOSPHERES
- History of biological metal utilization inferred through phylogenomic analysis of protein structures
- (2010) C. L. Dupont et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Homologs of aminoacyl-tRNA synthetases acylate carrier proteins and provide a link between ribosomal and nonribosomal peptide synthesis
- (2010) M. Mocibob et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Genome-wide analysis of integral membrane proteins from eubacterial, archaean, and eukaryotic organisms
- (2010) Erik Wallin et al. PROTEIN SCIENCE
- Exploring the Universe of Protein Structures beyond the Protein Data Bank
- (2010) Pilar Cossio et al. PLoS Computational Biology
- Conformational Dynamics in the Acyl-CoA Synthetases, Adenylation Domains of Non-ribosomal Peptide Synthetases, and Firefly Luciferase
- (2009) Andrew M. Gulick ACS Chemical Biology
- The origin, evolution and structure of the protein world
- (2009) Gustavo Caetano-Anollés et al. BIOCHEMICAL JOURNAL
- Genomic and structural aspects of protein evolution
- (2009) Cyrus Chothia et al. BIOCHEMICAL JOURNAL
- Biotin
- (2009) Janos Zempleni et al. BIOFACTORS
- One ancestor for two codes viewed from the perspective of two complementary modes of tRNA aminoacylation
- (2009) Andrei S Rodin et al. Biology Direct
- Helix insertion into bilayers and the evolution of membrane proteins
- (2009) Robert Renthal CELLULAR AND MOLECULAR LIFE SCIENCES
- Recent mechanistic insights into eukaryotic ribosomes
- (2009) Marina V Rodnina et al. CURRENT OPINION IN CELL BIOLOGY
- tRNA as an active chemical scaffold for diverse chemical transformations
- (2009) Christopher S. Francklyn et al. FEBS LETTERS
- The Evolutionary History of the Structure of 5S Ribosomal RNA
- (2009) Feng-Jie Sun et al. JOURNAL OF MOLECULAR EVOLUTION
- Formal Proof that the Split Genes of tRNAs of Nanoarchaeum equitans Are an Ancestral Character
- (2009) Massimo Di Giulio JOURNAL OF MOLECULAR EVOLUTION
- Working outside the protein-synthesis rules: insights into non-ribosomal peptide synthesis
- (2009) Mohamed A. Marahiel JOURNAL OF PEPTIDE SCIENCE
- Amidoligases with ATP-grasp, glutamine synthetase-like and acetyltransferase-like domains: synthesis of novel metabolites and peptide modifications of proteins
- (2009) Lakshminarayan M. Iyer et al. Molecular BioSystems
- Structural insights into nonribosomal peptide enzymatic assembly lines
- (2009) Alexander Koglin et al. NATURAL PRODUCT REPORTS
- Synthesis of activated pyrimidine ribonucleotides in prebiotically plausible conditions
- (2009) Matthew W. Powner et al. NATURE
- Cyclodipeptide synthases are a family of tRNA-dependent peptide bond–forming enzymes
- (2009) Muriel Gondry et al. Nature Chemical Biology
- The ribosome as a platform for co-translational processing, folding and targeting of newly synthesized proteins
- (2009) Günter Kramer et al. NATURE STRUCTURAL & MOLECULAR BIOLOGY
- A Man-Made ATP-Binding Protein Evolved Independent of Nature Causes Abnormal Growth in Bacterial Cells
- (2009) Joshua M. Stomel et al. PLoS One
- Autocatalysis and organocatalysis with synthetic structures
- (2009) S. Kamioka et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Nature of the protein universe
- (2009) M. Levitt PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Structure is three to ten times more conserved than sequence-A study of structural response in protein cores
- (2009) Kristoffer Illergård et al. PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS
- Self-assembly and function of primitive cell membranes
- (2009) Andrew Pohorille et al. RESEARCH IN MICROBIOLOGY
- Structures of the Ribosome in Intermediate States of Ratcheting
- (2009) W. Zhang et al. SCIENCE
- Self-Sustained Replication of an RNA Enzyme
- (2009) T. A. Lincoln et al. SCIENCE
- The Evolutionary Mechanics of Domain Organization in Proteomes and the Rise of Modularity in the Protein World
- (2009) Minglei Wang et al. STRUCTURE
- The Protein Folding Problem
- (2008) Ken A. Dill et al. Annual Review of Biophysics
- Predicting the conformations of peptides and proteins in early evolution. A review article submitted to Biology Direct
- (2008) E James Milner-White et al. Biology Direct
- Medium- and short-chain dehydrogenase/reductase gene and protein families
- (2008) K. L. Kavanagh et al. CELLULAR AND MOLECULAR LIFE SCIENCES
- Association energetics of membrane spanning α-helices
- (2008) K MACKENZIE et al. CURRENT OPINION IN STRUCTURAL BIOLOGY
- Making Molecules Make Themselves - the Chemistry of Artificial Replicators
- (2008) Annick Vidonne et al. EUROPEAN JOURNAL OF ORGANIC CHEMISTRY
- Structural and functional mapping of the archaeal multi-aminoacyl-tRNA synthetase complex
- (2008) Corinne D. Hausmann et al. FEBS LETTERS
- On the origin of the genetic code: signatures of its primordial complementarity in tRNAs and aminoacyl-tRNA synthetases
- (2008) S N Rodin et al. HEREDITY
- Evolutionary origins and directed evolution of RNA
- (2008) Andrew D. Ellington et al. INTERNATIONAL JOURNAL OF BIOCHEMISTRY & CELL BIOLOGY
- The origin and evolution of modern metabolism
- (2008) Gustavo Caetano-Anollés et al. INTERNATIONAL JOURNAL OF BIOCHEMISTRY & CELL BIOLOGY
- Template-directed synthesis of a genetic polymer in a model protocell
- (2008) Sheref S. Mansy et al. NATURE
- SUPERFAMILY—sophisticated comparative genomics, data mining, visualization and phylogeny
- (2008) Derek Wilson et al. NUCLEIC ACIDS RESEARCH
- The Transporter Classification Database: recent advances
- (2008) M. H. Saier et al. NUCLEIC ACIDS RESEARCH
- PDBsum new things
- (2008) R. A. Laskowski NUCLEIC ACIDS RESEARCH
- Structure and mechanism of ATP-binding cassette transporters
- (2008) K. P Locher PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES
- Evolutionary Patterns in the Sequence and Structure of Transfer RNA: A Window into Early Translation and the Genetic Code
- (2008) Feng-Jie Sun et al. PLoS One
- RNA-assisted catalysis in a protein enzyme: The 2'-hydroxyl of tRNAThr A76 promotes aminoacylation by threonyl-tRNA synthetase
- (2008) A. Minajigi et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Investigations of valanimycin biosynthesis: Elucidation of the role of seryl-tRNA
- (2008) R. P. Garg et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Novel protein folds and their nonsequential structural analogs
- (2008) Aysam Guerler et al. PROTEIN SCIENCE
- A signal relay between ribosomal protein S12 and elongation factor EF-Tu during decoding of mRNA
- (2008) S. T. Gregory et al. RNA
- Crystal Structure of the Termination Module of a Nonribosomal Peptide Synthetase
- (2008) A. Tanovic et al. SCIENCE
- The Implausibility of Metabolic Cycles on the Prebiotic Earth
- (2008) Leslie E Orgel PLOS BIOLOGY
- Domain Tree-Based Analysis of Protein Architecture Evolution
- (2007) K. Forslund et al. MOLECULAR BIOLOGY AND EVOLUTION
Publish scientific posters with Peeref
Peeref publishes scientific posters from all research disciplines. Our Diamond Open Access policy means free access to content and no publication fees for authors.
Learn MoreAsk a Question. Answer a Question.
Quickly pose questions to the entire community. Debate answers and get clarity on the most important issues facing researchers.
Get Started