Trinets encode tree-child and level-2 phylogenetic networks

Encoding and Constructing 1-Nested Phylogenetic Networks with Trinets

(2012) K. T. Huber et al.   ALGORITHMICA

CONSTRUCTING A MINIMUM PHYLOGENETIC NETWORK FROM A DENSE TRIPLET SET

(2012) MICHEL HABIB et al.   Journal of Bioinformatics and Computational Biology

QUARTETS AND UNROOTED PHYLOGENETIC NETWORKS

(2012) PHILIPPE GAMBETTE et al.   Journal of Bioinformatics and Computational Biology

New results on optimizing rooted triplets consistency

(2010) Jaroslaw Byrka et al.   DISCRETE APPLIED MATHEMATICS

Regular Networks Can be Uniquely Constructed from Their Trees

(2010) S J Willson   IEEE-ACM Transactions on Computational Biology and Bioinformatics

A Practical Algorithm for Reconstructing Level-1 Phylogenetic Networks

(2010) Katharina T Huber et al.   IEEE-ACM Transactions on Computational Biology and Bioinformatics

Comparison of Galled Trees

(2010) G Cardona et al.   IEEE-ACM Transactions on Computational Biology and Bioinformatics

New common ancestor problems in trees and directed acyclic graphs

(2010) Johannes Fischer et al.   INFORMATION PROCESSING LETTERS

Locating a tree in a phylogenetic network

(2010) Leo van Iersel et al.   INFORMATION PROCESSING LETTERS

When two trees go to war

(2010) Leo van Iersel et al.   JOURNAL OF THEORETICAL BIOLOGY

Constructing the Simplest Possible Phylogenetic Network from Triplets

(2009) Leo van Iersel et al.   ALGORITHMICA

Constructing Level-2 Phylogenetic Networks from Triplets

(2009) L. van Iersel et al.   IEEE-ACM Transactions on Computational Biology and Bioinformatics

Comparison of Tree-Child Phylogenetic Networks

(2009) G. Cardona et al.   IEEE-ACM Transactions on Computational Biology and Bioinformatics

Path lengths in tree-child time consistent hybridization networks

(2009) Gabriel Cardona et al.   INFORMATION SCIENCES

UNIQUENESS, INTRACTABILITY AND EXACT ALGORITHMS: REFLECTIONS ON LEVEL-K PHYLOGENETIC NETWORKS

(2009) LEO VAN IERSEL et al.   Journal of Bioinformatics and Computational Biology

A distance metric for a class of tree-sibling phylogenetic networks

(2008) Gabriel Cardona et al.   BIOINFORMATICS

PhySIC_IST: cleaning source trees to infer more informative supertrees

(2008) Celine Scornavacca et al.   BMC BIOINFORMATICS

Parsimony Score of Phylogenetic Networks: Hardness Results and a Linear-Time Heuristic

(2008) Guohua Jin et al.   IEEE-ACM Transactions on Computational Biology and Bioinformatics

Metrics for Phylogenetic Networks I: Generalizations of the Robinson-Foulds Metric

(2008) G. Cardona et al.   IEEE-ACM Transactions on Computational Biology and Bioinformatics

Metrics for Phylogenetic Networks II: Nodal and Triplets Metrics

(2008) G. Cardona et al.   IEEE-ACM Transactions on Computational Biology and Bioinformatics