Encoding and Constructing 1-Nested Phylogenetic Networks with Trinets

On encodings of phylogenetic networks of bounded level

(2011) Philippe Gambette et al.   JOURNAL OF MATHEMATICAL BIOLOGY

New results on optimizing rooted triplets consistency

(2010) Jaroslaw Byrka et al.   DISCRETE APPLIED MATHEMATICS

Regular Networks Can be Uniquely Constructed from Their Trees

(2010) S J Willson   IEEE-ACM Transactions on Computational Biology and Bioinformatics

A Practical Algorithm for Reconstructing Level-1 Phylogenetic Networks

(2010) Katharina T Huber et al.   IEEE-ACM Transactions on Computational Biology and Bioinformatics

Comparison of Galled Trees

(2010) G Cardona et al.   IEEE-ACM Transactions on Computational Biology and Bioinformatics

Constructing the Simplest Possible Phylogenetic Network from Triplets

(2009) Leo van Iersel et al.   ALGORITHMICA

Inferring polyploid phylogenies from multiply-labeled gene trees

(2009) Martin Lott et al.   BMC EVOLUTIONARY BIOLOGY

Constructing Level-2 Phylogenetic Networks from Triplets

(2009) L. van Iersel et al.   IEEE-ACM Transactions on Computational Biology and Bioinformatics

A distance metric for a class of tree-sibling phylogenetic networks

(2008) Gabriel Cardona et al.   BIOINFORMATICS

Parsimony Score of Phylogenetic Networks: Hardness Results and a Linear-Time Heuristic

(2008) Guohua Jin et al.   IEEE-ACM Transactions on Computational Biology and Bioinformatics

Metrics for Phylogenetic Networks I: Generalizations of the Robinson-Foulds Metric

(2008) G. Cardona et al.   IEEE-ACM Transactions on Computational Biology and Bioinformatics

Metrics for Phylogenetic Networks II: Nodal and Triplets Metrics

(2008) G. Cardona et al.   IEEE-ACM Transactions on Computational Biology and Bioinformatics

Tripartitions do not always discriminate phylogenetic networks

(2007) Gabriel Cardona et al.   MATHEMATICAL BIOSCIENCES