NGS-eval: NGS Error analysis and novel sequence VAriant detection tooL
Published 2015 View Full Article
- Home
- Publications
- Publication Search
- Publication Details
Title
NGS-eval: NGS Error analysis and novel sequence VAriant detection tooL
Authors
Keywords
-
Journal
NUCLEIC ACIDS RESEARCH
Volume 43, Issue W1, Pages W301-W305
Publisher
Oxford University Press (OUP)
Online
2015-04-16
DOI
10.1093/nar/gkv346
References
Ask authors/readers for more resources
Related references
Note: Only part of the references are listed.- Unraveling the outcome of 16S rDNA-based taxonomy analysis through mock data and simulations
- (2014) Ali May et al. BIOINFORMATICS
- Development of a Dual-Index Sequencing Strategy and Curation Pipeline for Analyzing Amplicon Sequence Data on the MiSeq Illumina Sequencing Platform
- (2013) James J. Kozich et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- Updating benchtop sequencing performance comparison
- (2013) Sebastian Jünemann et al. NATURE BIOTECHNOLOGY
- QualitySNPng: a user-friendly SNP detection and visualization tool
- (2013) Harm Nijveen et al. NUCLEIC ACIDS RESEARCH
- Comparing clustering and pre-processing in taxonomy analysis
- (2012) Marc J. Bonder et al. BIOINFORMATICS
- A tale of three next generation sequencing platforms: comparison of Ion torrent, pacific biosciences and illumina MiSeq sequencers
- (2012) Michael Quail et al. BMC GENOMICS
- A survey of error-correction methods for next-generation sequencing
- (2012) X. Yang et al. BRIEFINGS IN BIOINFORMATICS
- Performance comparison of benchtop high-throughput sequencing platforms
- (2012) Nicholas J Loman et al. NATURE BIOTECHNOLOGY
- Nuclear ribosomal internal transcribed spacer (ITS) region as a universal DNA barcode marker for Fungi
- (2012) C. L. Schoch et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- A Platform-Independent Method for Detecting Errors in Metagenomic Sequencing Data: DRISEE
- (2012) Kevin P. Keegan et al. PLoS Computational Biology
- UCHIME improves sensitivity and speed of chimera detection
- (2011) Robert C. Edgar et al. BIOINFORMATICS
- Removing Noise From Pyrosequenced Amplicons
- (2011) Christopher Quince et al. BMC BIOINFORMATICS
- Accuracy and quality assessment of 454 GS-FLX Titanium pyrosequencing
- (2011) André Gilles et al. BMC GENOMICS
- Chimeric 16S rRNA sequence formation and detection in Sanger and 454-pyrosequenced PCR amplicons
- (2011) B. J. Haas et al. GENOME RESEARCH
- SNVer: a statistical tool for variant calling in analysis of pooled or individual next-generation sequencing data
- (2011) Zhi Wei et al. NUCLEIC ACIDS RESEARCH
- Reducing the Effects of PCR Amplification and Sequencing Artifacts on 16S rRNA-Based Studies
- (2011) Patrick D. Schloss et al. PLoS One
- Search and clustering orders of magnitude faster than BLAST
- (2010) Robert C. Edgar BIOINFORMATICS
- Sampling and pyrosequencing methods for characterizing bacterial communities in the human gut using 16S sequence tags
- (2010) Gary D Wu et al. BMC MICROBIOLOGY
- Ironing out the wrinkles in the rare biosphere through improved OTU clustering
- (2010) Susan M. Huse et al. ENVIRONMENTAL MICROBIOLOGY
- Rapidly denoising pyrosequencing amplicon reads by exploiting rank-abundance distributions
- (2010) Jens Reeder et al. NATURE METHODS
- QIIME allows analysis of high-throughput community sequencing data
- (2010) J Gregory Caporaso et al. NATURE METHODS
- Global patterns of 16S rRNA diversity at a depth of millions of sequences per sample
- (2010) J. G. Caporaso et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Introducing mothur: Open-Source, Platform-Independent, Community-Supported Software for Describing and Comparing Microbial Communities
- (2009) P. D. Schloss et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- The NIH Human Microbiome Project
- (2009) et al. GENOME RESEARCH
- A core gut microbiome in obese and lean twins
- (2008) Peter J. Turnbaugh et al. NATURE
Find Funding. Review Successful Grants.
Explore over 25,000 new funding opportunities and over 6,000,000 successful grants.
ExplorePublish scientific posters with Peeref
Peeref publishes scientific posters from all research disciplines. Our Diamond Open Access policy means free access to content and no publication fees for authors.
Learn More