Dynamic signal processing by ribozyme-mediated RNA circuits to control gene expression

Repurposing CRISPR as an RNA-Guided Platform for Sequence-Specific Control of Gene Expression

(2013) Lei S. Qi et al.   CELL

CRISPR-Mediated Modular RNA-Guided Regulation of Transcription in Eukaryotes

(2013) Luke A. Gilbert et al.   CELL

Theoretical and experimental analysis of the forced LacI-AraC oscillator with a minimal gene regulatory model

(2013) Guillermo Rodrigo et al.   CHAOS

An engineered small RNA-mediated genetic switch based on a ribozyme expression platform

(2013) Benedikt Klauser et al.   NUCLEIC ACIDS RESEARCH

A new frontier in synthetic biology: automated design of small RNA devices in bacteria

(2013) Guillermo Rodrigo et al.   TRENDS IN GENETICS

RNA processing enables predictable programming of gene expression

(2012) Lei Qi et al.   NATURE BIOTECHNOLOGY

Ribozyme-based insulator parts buffer synthetic circuits from genetic context

(2012) Chunbo Lou et al.   NATURE BIOTECHNOLOGY

Rationally designed families of orthogonal RNA regulators of translation

(2012) Vivek K Mutalik et al.   Nature Chemical Biology

An adaptor from translational to transcriptional control enables predictable assembly of complex regulation

(2012) Chang C Liu et al.   NATURE METHODS

Engineering naturally occurring trans -acting non-coding RNAs to sense molecular signals

(2012) Lei Qi et al.   NUCLEIC ACIDS RESEARCH

De novo automated design of small RNA circuits for engineering synthetic riboregulation in living cells

(2012) G. Rodrigo et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Genetic switchboard for synthetic biology applications

(2012) J. M. Callura et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Fluorescence Imaging of Cellular Metabolites with RNA

(2012) Jeremy S. Paige et al.   SCIENCE

Dynamic Energy Landscapes of Riboswitches Help Interpret Conformational Rearrangements and Function

(2012) Giulio Quarta et al.   PLoS Computational Biology

Engineering Biological Systems with Synthetic RNA Molecules

(2011) Joe C. Liang et al.   MOLECULAR CELL

Queueing up for enzymatic processing: correlated signaling through coupled degradation

(2011) N. A. Cookson et al.   Molecular Systems Biology

Rewiring Cells: Synthetic Biology as a Tool to Interrogate the Organizational Principles of Living Systems

(2010) Caleb J. Bashor et al.   Annual Review of Biophysics

Engineering Signal Transduction Pathways

(2010) Christina Kiel et al.   CELL

A synchronized quorum of genetic clocks

(2010) Tal Danino et al.   NATURE

Tracking, tuning, and terminating microbial physiology using synthetic riboregulators

(2010) J. M. Callura et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Artificial Ribozyme Switches Containing Natural Riboswitch Aptamer Domains

(2009) Markus Wieland et al.   ANGEWANDTE CHEMIE-INTERNATIONAL EDITION

Microfluidic devices for measuring gene network dynamics in single cells

(2009) Matthew R. Bennett et al.   NATURE REVIEWS GENETICS

In silico selection of RNA aptamers

(2009) Y. Chushak et al.   NUCLEIC ACIDS RESEARCH

Design Principles for Ligand-Sensing, Conformation-Switching Ribozymes

(2009) Xi Chen et al.   PLoS Computational Biology

Improved Aptazyme Design and In Vivo Screening Enable Riboswitching in Bacteria

(2008) Markus Wieland et al.   ANGEWANDTE CHEMIE-INTERNATIONAL EDITION