Ribonucleoprotein particles of bacterial small non-coding RNA IsrA (IS61 or McaS) and its interaction with RNA polymerase core may link transcription to mRNA fate

A pause sequence enriched at translation start sites drives transcription dynamics in vivo

(2014) M. H. Larson et al.   SCIENCE

Recognition of the small regulatory RNA RydC by the bacterial Hfq protein

(2014) Daniela Dimastrogiovanni et al.   eLife

Regulatory RNAs and target mRNA decay in prokaryotes

(2013) David Lalaouna et al.   Biochimica et Biophysica Acta-Gene Regulatory Mechanisms

The social fabric of the RNA degradosome

(2013) Katarzyna J. Bandyra et al.   Biochimica et Biophysica Acta-Gene Regulatory Mechanisms

SR Proteins Collaborate with 7SK and Promoter-Associated Nascent RNA to Release Paused Polymerase

(2013) Xiong Ji et al.   CELL

Dual function of the McaS small RNA in controlling biofilm formation

(2013) M. G. Jorgensen et al.   GENES & DEVELOPMENT

Small Regulatory RNAs in the Control of Motility and Biofilm Formation in E. coli and Salmonella

(2013) Franziska Mika et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Bacterial Small RNA-based Negative Regulation: Hfq and Its Accomplices

(2013) Nicholas De Lay et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

A rule-based kinetic model of RNA polymerase II C-terminal domain phosphorylation

(2013) S. Aitken et al.   Journal of the Royal Society Interface

CsrA activatesflhDCexpression by protectingflhDCmRNA from RNase E-mediated cleavage

(2013) Alexander V. Yakhnin et al.   MOLECULAR MICROBIOLOGY

Exponential Megapriming PCR (EMP) Cloning—Seamless DNA Insertion into Any Target Plasmid without Sequence Constraints

(2013) Alexander Ulrich et al.   PLoS One

Analysis and Expansion of the Role of the Escherichia coli Protein ProQ

(2013) Daniel T. Sheidy et al.   PLoS One

Letter from the Editor

(2013) Renée Schroeder et al.   RNA Biology

The non-coding snRNA 7SK controls transcriptional termination, poising, and bidirectionality in embryonic stem cells

(2013) Gonçalo Castelo-Branco et al.   GENOME BIOLOGY

Activating Transcription in Bacteria

(2012) David J. Lee et al.   Annual Review of Microbiology

Post-transcriptional regulation on a global scale: form and function of Csr/Rsm systems

(2012) Tony Romeo et al.   ENVIRONMENTAL MICROBIOLOGY

Escherichia colicold-shock gene profiles in response to over-expression/deletion of CsdA, RNase R and PNPase 
and relevance to low-temperature RNA metabolism

(2012) Sangita Phadtare   GENES TO CELLS

Dynamics of Ribosomal Protein S1 on a Bacterial Ribosome with Cross-Linking and Mass Spectrometry

(2012) Matthew A. Lauber et al.   MOLECULAR & CELLULAR PROTEOMICS

Small regulatory RNAs control the multi-cellular adhesive lifestyle of Escherichia coli

(2012) Mikkel Girke Jørgensen et al.   MOLECULAR MICROBIOLOGY

A small RNA that regulates motility and biofilm formation in response to changes in nutrient availability in Escherichia coli

(2012) Maureen K. Thomason et al.   MOLECULAR MICROBIOLOGY

FRUIT, a Scar-Free System for Targeted Chromosomal Mutagenesis, Epitope Tagging, and Promoter Replacement in Escherichia coli and Salmonella enterica

(2012) Anne M. Stringer et al.   PLoS One

Small RNA binding to the lateral surface of Hfq hexamers and structural rearrangements upon mRNA target recognition

(2012) E. Sauer et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

ProQ Is an RNA Chaperone that Controls ProP Levels inEscherichia coli

(2011) Steven G. Chaulk et al.   BIOCHEMISTRY

Regulation by Small RNAs in Bacteria: Expanding Frontiers

(2011) Gisela Storz et al.   MOLECULAR CELL

Regulation of 6S RNA by pRNA synthesis is required for efficient recovery from stationary phase in E. coli and B. subtilis

(2011) Amy T. Cavanagh et al.   NUCLEIC ACIDS RESEARCH

In vitro experimental system for analysis of transcription–translation coupling

(2011) Daniel Castro-Roa et al.   NUCLEIC ACIDS RESEARCH

Functional characterization of bacterial sRNAs using a network biology approach

(2011) S. R. Modi et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

PolyU tail of rho-independent terminator of bacterial small RNAs is essential for Hfq action

(2011) Hironori Otaka et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Small RNAs endow a transcriptional activator with essential repressor functions for single-tier control of a global stress regulon

(2011) E. B. Gogol et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Isolation of small RNA-binding proteins fromE. coli: Evidence for frequent interaction of RNAs with RNA polymerase

(2011) Nikolai Windbichler et al.   RNA Biology

Role of polynucleotide phosphorylase in sRNA function in Escherichia coli

(2011) N. De Lay et al.   RNA

C-Terminally Truncated Derivatives of Escherichia coli Hfq Are Proficient in Riboregulation

(2010) Anders Steno Olsen et al.   JOURNAL OF MOLECULAR BIOLOGY

Splicing-Dependent RNA Polymerase Pausing in Yeast

(2010) Ross D. Alexander et al.   MOLECULAR CELL

Yeast Pre-rRNA Processing and Modification Occur Cotranscriptionally

(2010) Martin Koš et al.   MOLECULAR CELL

Genomic SELEX for Hfq-binding RNAs identifies genomic aptamers predominantly in antisense transcripts

(2010) C. Lorenz et al.   NUCLEIC ACIDS RESEARCH

Cooperation Between Translating Ribosomes and RNA Polymerase in Transcription Elongation

(2010) S. Proshkin et al.   SCIENCE

Bacterial/archaeal/organellar polyadenylation

(2010) Bijoy K. Mohanty et al.   Wiley Interdisciplinary Reviews-RNA

Role of the sRNA GcvB in regulation of cycA in Escherichia coli

(2009) S. C. Pulvermacher et al.   MICROBIOLOGY-SGM

6S RNA binding to Eσ70requires a positively charged surface of σ70region 4.2

(2009) Andrew D. Klocko et al.   MOLECULAR MICROBIOLOGY

Non-coding RNAs regulating the transcriptional machinery

(2008) Charlotte Barrandon et al.   BIOLOGY OF THE CELL