Next-generation sequencing reveals the biological significance of the N2,3-ethenoguanine lesion in vivo

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

Theory Uncovers an Unusual Mechanism of DNA Repair of a Lesioned Adenine by AlkB Enzymes

(2014) Binju Wang et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

A Chemical Genetics Analysis of the Roles of Bypass Polymerase DinB and DNA Repair Protein AlkB in Processing N2-Alkylguanine Lesions In Vivo

(2014) Nidhi Shrivastav et al.   PLoS One

PEAR: a fast and accurate Illumina Paired-End reAd mergeR

(2013) J. Zhang et al.   BIOINFORMATICS

Mutagenic and Cytotoxic Properties of Oxidation Products of 5-Methylcytosine Revealed by Next-Generation Sequencing

(2013) Xi-Wen Xing et al.   PLoS One

Cancer Genome Landscapes

(2013) B. Vogelstein et al.   SCIENCE

Replication ofN2,3-Ethenoguanine by DNA Polymerases

(2012) Linlin Zhao et al.   ANGEWANDTE CHEMIE-INTERNATIONAL EDITION

Basis of Miscoding of the DNA AdductN2,3-Ethenoguanine by Human Y-family DNA Polymerases

(2012) Linlin Zhao et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

Hallmarks of Cancer: The Next Generation

(2011) Douglas Hanahan et al.   CELL

Escherichia coli Y family DNA polymerases

(2011) Jason et al.   Frontiers in Bioscience-Landmark

High-throughput analysis of the mutagenic and cytotoxic properties of DNA lesions by next-generation sequencing

(2011) Bifeng Yuan et al.   NUCLEIC ACIDS RESEARCH

Structure of the 1,N2-Etheno-2′-deoxyguanosine Lesion in the 3′-G(εdG)T-5′ Sequence Opposite a One-Base Deletion

(2010) Ganesh Shanmugam et al.   BIOCHEMISTRY

Development and Application of an LC-MS/MS Method for the Detection of the Vinyl Chloride-Induced DNA AdductN2,3-Ethenoguanine in Tissues of Adult and Weanling Rats Following Exposure to [13C2]-VC

(2010) Esra Mutlu et al.   CHEMICAL RESEARCH IN TOXICOLOGY

Iron-catalysed oxidation intermediates captured in a DNA repair dioxygenase

(2010) Chengqi Yi et al.   NATURE

Analysis of specialized DNA polymerases expression in human gliomas: association with prognostic significance

(2010) Huibo Wang et al.   NEURO-ONCOLOGY

Endogenous versus Exogenous DNA Adducts: Their Role in Carcinogenesis, Epidemiology, and Risk Assessment

(2010) J. A. Swenberg et al.   TOXICOLOGICAL SCIENCES

A Non-Heme Iron-Mediated Chemical Demethylation in DNA and RNA

(2009) Chengqi Yi et al.   ACCOUNTS OF CHEMICAL RESEARCH

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Chemical biology of mutagenesis and DNA repair: cellular responses to DNA alkylation

(2009) N. Shrivastav et al.   CARCINOGENESIS

Eukaryotic Translesion Polymerases and Their Roles and Regulation in DNA Damage Tolerance

(2009) L. S. Waters et al.   MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS

Sequencing technologies — the next generation

(2009) Michael L. Metzker   NATURE REVIEWS GENETICS

Next-Generation DNA Sequencing Methods

(2008) Elaine R. Mardis   Annual Review of Genomics and Human Genetics

Efficient and accurate bypass of N2-(1-carboxyethyl)-2'-deoxyguanosine by DinB DNA polymerase in vitro and in vivo

(2008) B. Yuan et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA