A framework for improving microRNA prediction in non-human genomes

miREval 2.0: a web tool for simple microRNA prediction in genome sequences

(2013) Dadi Gao et al.   BIOINFORMATICS

HuntMi: an efficient and taxon-specific approach in pre-miRNA identification

(2013) Adam Gudyś et al.   BMC BIOINFORMATICS

Dehydration mediated microRNA response in the African clawed frog Xenopus laevis

(2013) Cheng-Wei Wu et al.   GENE

Improved and Promising Identification of Human MicroRNAs by Incorporating a High-Quality Negative Set

(2013) Leyi Wei et al.   IEEE-ACM Transactions on Computational Biology and Bioinformatics

MicroRNA-31 Sensitizes Human Breast Cells to Apoptosis by Direct Targeting of Protein Kinase C ϵ (PKCϵ)

(2013) Cindy Körner et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

miRTarBase update 2014: an information resource for experimentally validated miRNA-target interactions

(2013) Sheng-Da Hsu et al.   NUCLEIC ACIDS RESEARCH

Effective Classification of MicroRNA Precursors Using Feature Mining and AdaBoost Algorithms

(2013) Ling Zhong et al.   OMICS-A JOURNAL OF INTEGRATIVE BIOLOGY

Conserved microRNA pathway regulates developmental timing of retinal neurogenesis

(2013) A. La Torre et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Global microRNA elevation by inducible Exportin 5 regulates cell cycle entry

(2013) Y. W. Iwasaki et al.   RNA

AB INITIO HUMAN miRNA AND PRE-miRNA PREDICTION

(2013) IGOR I. TITOV et al.   Journal of Bioinformatics and Computational Biology

Evidence for cell cycle suppression and microRNA regulation of cyclin D1 during anoxia exposure in turtles

(2012) Kyle K. Biggar et al.   CELL CYCLE

HIF-1α regulation in mammalian hibernators: role of non-coding RNA in HIF-1α control during torpor in ground squirrels and bats

(2012) Yulia Maistrovski et al.   JOURNAL OF COMPARATIVE PHYSIOLOGY B-BIOCHEMICAL SYSTEMIC AND ENVIRONMENTAL PHYSIOLOGY

Heterogeneous ensemble approach with discriminative features and modified-SMOTEbagging for pre-miRNA classification

(2012) Supatcha Lertampaiporn et al.   NUCLEIC ACIDS RESEARCH

Integrated Sequence-Structure Motifs Suffice to Identify microRNA Precursors

(2012) Xiuqin Liu et al.   PLoS One

Short Co-occurring Polypeptide Regions Can Predict Global Protein Interaction Maps

(2012) Sylvain Pitre et al.   Scientific Reports

LIBSVM

(2012) Chih-Chung Chang et al.   ACM Transactions on Intelligent Systems and Technology

MicroRNA Regulation in Extreme Environments: Differential Expression of MicroRNAs in the Intertidal Snail Littorina littorea During Extended Periods of Freezing and Anoxia

(2012) Kyle K. Biggar et al.   GENOMICS PROTEOMICS & BIOINFORMATICS

MiRenSVM: towards better prediction of microRNA precursors using an ensemble SVM classifier with multi-loop features

(2011) Jiandong Ding et al.   BMC BIOINFORMATICS

MiRPara: a SVM-based software tool for prediction of most probable microRNA coding regions in genome scale sequences

(2011) Yonggan Wu et al.   BMC BIOINFORMATICS

Identification of microRNA precursors based on random forest with network-level representation method of stem-loop structure

(2011) Jiamin Xiao et al.   BMC BIOINFORMATICS

Effective sample selection for classification of pre-miRNAs

(2011) K. Han   GENETICS AND MOLECULAR RESEARCH

Genetic algorithm-based efficient feature selection for classification of pre-miRNAs

(2011) P. Xuan et al.   GENETICS AND MOLECULAR RESEARCH

miRDeep2 accurately identifies known and hundreds of novel microRNA genes in seven animal clades

(2011) Marc R. Friedländer et al.   NUCLEIC ACIDS RESEARCH

MIReNA: finding microRNAs with high accuracy and no learning at genome scale and from deep sequencing data

(2010) Anthony Mathelier et al.   BIOINFORMATICS

CD-HIT Suite: a web server for clustering and comparing biological sequences

(2010) Ying Huang et al.   BIOINFORMATICS

The European Nucleotide Archive

(2010) R. Leinonen et al.   NUCLEIC ACIDS RESEARCH

miRBase: integrating microRNA annotation and deep-sequencing data

(2010) A. Kozomara et al.   NUCLEIC ACIDS RESEARCH

Tissue-Specific Target Analysis of Disease-Associated MicroRNAs in Human Signaling Pathways

(2010) Andreas Kowarsch et al.   PLoS One

microPred: effective classification of pre-miRNAs for human miRNA gene prediction

(2009) Rukshan Batuwita et al.   BIOINFORMATICS

HHMMiR: efficient de novo prediction of microRNAs using hierarchical hidden Markov models

(2009) Sabah Kadri et al.   BMC BIOINFORMATICS

MicroRNA-125b Promotes Neuronal Differentiation in Human Cells by Repressing Multiple Targets

(2009) M. T. N. Le et al.   MOLECULAR AND CELLULAR BIOLOGY

Learning from positive examples when the negative class is undetermined- microRNA gene identification

(2008) Malik Yousef et al.   Algorithms for Molecular Biology

MicroRNA prediction with a novel ranking algorithm based on random walks

(2008) Y. Xu et al.   BIOINFORMATICS

High-throughput sequencing of Medicago truncatula short RNAs identifies eight new miRNA families

(2008) Gyorgy Szittya et al.   BMC GENOMICS

Deep Sequencing of Chicken microRNAs

(2008) Joan Burnside et al.   BMC GENOMICS

Discovering microRNAs from deep sequencing data using miRDeep

(2008) Marc R Friedländer et al.   NATURE BIOTECHNOLOGY

Database resources of the National Center for Biotechnology Information

(2008) E. W. Sayers et al.   NUCLEIC ACIDS RESEARCH