Structural informatics, modeling, and design with an open-source Molecular Software Library (MSL)

Protein design with fragment databases

(2011) Erik Verschueren et al.   CURRENT OPINION IN STRUCTURAL BIOLOGY

Computational design of membrane proteins

(2011) Alessandro Senes   CURRENT OPINION IN STRUCTURAL BIOLOGY

Recent advances in computational protein design

(2011) Robert J Pantazes et al.   CURRENT OPINION IN STRUCTURAL BIOLOGY

Predicting the Tolerated Sequences for Proteins and Protein Interfaces Using RosettaBackrub Flexible Backbone Design

(2011) Colin A. Smith et al.   PLoS One

Generalized Fragment Picking in Rosetta: Design, Protocols and Applications

(2011) Dominik Gront et al.   PLoS One

Transmembrane orientation and possible role of the fusogenic peptide from parainfluenza virus 5 (PIV5) in promoting fusion

(2011) J. E. Donald et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

De Novo Design and Molecular Assembly of a Transmembrane Diporphyrin-Binding Protein Complex

(2010) Ivan V. Korendovych et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

Salt bridges: Geometrically specific, designable interactions

(2010) Jason E. Donald et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

Biopython: freely available Python tools for computational molecular biology and bioinformatics

(2009) P. J. A. Cock et al.   BIOINFORMATICS

Design of membrane proteins: toward functional systems

(2009) Giovanna Ghirlanda   CURRENT OPINION IN CHEMICAL BIOLOGY

The sequence–structure relationship and protein function prediction

(2009) M I Sadowski et al.   CURRENT OPINION IN STRUCTURAL BIOLOGY

Experimental and Computational Evaluation of Forces Directing the Association of Transmembrane Helices

(2009) Yao Zhang et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

Computer-aided design of functional protein interactions

(2009) Daniel J Mandell et al.   Nature Chemical Biology

PROSITE, a protein domain database for functional characterization and annotation

(2009) Christian J. A. Sigrist et al.   NUCLEIC ACIDS RESEARCH

Consensus motif for integrin transmembrane helix association

(2009) B. W. Berger et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Improved prediction of protein side-chain conformations with SCWRL4

(2009) Georgii G. Krivov et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

Algorithm for backrub motions in protein design

(2008) I. Georgiev et al.   BIOINFORMATICS

Progress and challenges in protein structure prediction

(2008) Yang Zhang   CURRENT OPINION IN STRUCTURAL BIOLOGY

De novo protein structure generation from incomplete chemical shift assignments

(2008) Yang Shen et al.   JOURNAL OF BIOMOLECULAR NMR