GPU-accelerated atom and dynamic bond visualization using hyperballs: A unified algorithm for balls, sticks, and hyperboloids

SEURAT: Visual analytics for the integrated analysis of microarray data

(2010) Alexander Gribov et al.   BMC Medical Genomics

Accelerated Visualization of Dynamic Molecular Surfaces

(2010) Norbert Lindow et al.   COMPUTER GRAPHICS FORUM

Practical modeling of molecular systems with symmetries

(2010) Sergei Grudinin et al.   JOURNAL OF COMPUTATIONAL CHEMISTRY

GPU-accelerated molecular modeling coming of age

(2010) John E. Stone et al.   JOURNAL OF MOLECULAR GRAPHICS & MODELLING

The structures of the anti-tuberculosis antibiotics viomycin and capreomycin bound to the 70S ribosome

(2010) Robin E Stanley et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

Atomic-Level Characterization of the Structural Dynamics of Proteins

(2010) D. E. Shaw et al.   SCIENCE

Coarse-Grain Simulations of the R-SNARE Fusion Protein in its Membrane Environment Detect Long-Lived Conformational Sub-States

(2009) Marie-Pierre Durrieu et al.   CHEMPHYSCHEM

Interactive Visualization of Molecular Surface Dynamics

(2009) M. Krone et al.   IEEE TRANSACTIONS ON VISUALIZATION AND COMPUTER GRAPHICS

Complex molecular assemblies at hand via interactive simulations

(2009) Olivier Delalande et al.   JOURNAL OF COMPUTATIONAL CHEMISTRY

10-Å CryoEM Structure and Molecular Model of the Myriapod (Scutigera) 6×6mer Hemocyanin: Understanding a Giant Oxygen Transport Protein

(2009) Jürgen Markl et al.   JOURNAL OF MOLECULAR BIOLOGY

A fast protein-ligand docking algorithm based on hydrogen bond matching and surface shape complementarity

(2009) Wenjia Luo et al.   JOURNAL OF MOLECULAR MODELING

Regulation of the Protein-Conducting Channel by a Bound Ribosome

(2009) James Gumbart et al.   STRUCTURE

Lipids on the move: Simulations of membrane pores, domains, stalks and curves

(2008) Siewert J. Marrink et al.   BIOCHIMICA ET BIOPHYSICA ACTA-BIOMEMBRANES

Interactions between Neuronal Fusion Proteins Explored by Molecular Dynamics

(2008) Marie-Pierre Durrieu et al.   BIOPHYSICAL JOURNAL

ProteoLens: a visual analytic tool for multi-scale database-driven biological network data mining

(2008) Tianxiao Huan et al.   BMC BIOINFORMATICS

Anton, a special-purpose machine for molecular dynamics simulation

(2008) David E. Shaw et al.   COMMUNICATIONS OF THE ACM

2D depiction of nonbonding interactions for protein complexes

(2008) Peng Zhou et al.   JOURNAL OF COMPUTATIONAL CHEMISTRY

Integration of Small-Angle X-Ray Scattering Data into Structural Modeling of Proteins and Their Assemblies

(2008) Friedrich Förster et al.   JOURNAL OF MOLECULAR BIOLOGY

MetaMol: High-quality visualization of molecular skin surface

(2008) Matthieu Chavent et al.   JOURNAL OF MOLECULAR GRAPHICS & MODELLING

VIPERdb2: an enhanced and web API enabled relational database for structural virology

(2008) M. Carrillo-Tripp et al.   NUCLEIC ACIDS RESEARCH

Structure of the Kinesin13-Microtubule Ring Complex

(2008) Dongyan Tan et al.   STRUCTURE