Comparative interrogation of the developing xylem transcriptomes of two wood-forming species:Populus trichocarpaandEucalyptus grandis

Lignin biosynthesis perturbations affect secondary cell wall composition and saccharification yield in Arabidopsis thaliana

(2013) Rebecca Van Acker et al.   Biotechnology for Biofuels

The developing xylem transcriptome and genome-wide analysis of alternative splicing in Populus trichocarpa (black cottonwood) populations

(2013) Hua Bao et al.   BMC GENOMICS

Caffeoyl Shikimate Esterase (CSE) Is an Enzyme in the Lignin Biosynthetic Pathway in Arabidopsis

(2013) R. Vanholme et al.   SCIENCE

Navigating the transcriptional roadmap regulating plant secondary cell wall deposition

(2013) Steven G. Hussey et al.   Frontiers in Plant Science

A spruce gene map infers ancient plant genome reshuffling and subsequent slow evolution in the gymnosperm lineage leading to extant conifers

(2012) Nathalie Pavy et al.   BMC BIOLOGY

Xylem tissue specification, patterning, and differentiation mechanisms

(2012) Mathias Schuetz et al.   JOURNAL OF EXPERIMENTAL BOTANY

Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks

(2012) Cole Trapnell et al.   Nature Protocols

The Class II KNOX gene KNAT7 negatively regulates secondary wall formation in Arabidopsis and is functionally conserved in Populus

(2012) Eryang Li et al.   NEW PHYTOLOGIST

Designed for deconstruction - poplar trees altered in cell wall lignification improve the efficacy of bioethanol production

(2012) Shawn D. Mansfield et al.   NEW PHYTOLOGIST

Differential expression analysis of multifactor RNA-Seq experiments with respect to biological variation

(2012) Davis J. McCarthy et al.   NUCLEIC ACIDS RESEARCH

Tissue-type-specific transcriptome analysis identifies developing xylem-specific promoters in poplar

(2012) Jae-Heung Ko et al.   PLANT BIOTECHNOLOGY JOURNAL

MYB103 is required forFERULATE-5-HYDROXYLASEexpression and syringyl lignin biosynthesis in Arabidopsis stems

(2012) David Öhman et al.   PLANT JOURNAL

De novo assembled expressed gene catalog of a fast-growing Eucalyptus tree produced by Illumina mRNA-Seq

(2011) Eshchar Mizrachi et al.   BMC GENOMICS

Exploring new strategies for cellulosic biofuels production

(2011) Paul Langan et al.   Energy & Environmental Science

SNP discovery in black cottonwood (Populus trichocarpa) by population transcriptome resequencing

(2011) ARMANDO GERALDES et al.   Molecular Ecology Resources

Cellulose factories: advancing bioenergy production from forest trees

(2011) Eshchar Mizrachi et al.   NEW PHYTOLOGIST

Stem anatomy supports Arabidopsis thaliana as a model for insular woodiness

(2011) Frederic Lens et al.   NEW PHYTOLOGIST

A White Spruce Gene Catalog for Conifer Genome Analyses

(2011) Philippe Rigault et al.   PLANT PHYSIOLOGY

REVIGO Summarizes and Visualizes Long Lists of Gene Ontology Terms

(2011) Fran Supek et al.   PLoS One

Lignin content in natural Populus variants affects sugar release

(2011) M. H. Studer et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Wood formation in Angiosperms

(2010) Annabelle Déjardin et al.   COMPTES RENDUS BIOLOGIES

Evolution of development of vascular cambia and secondary growth

(2010) Rachel Spicer et al.   NEW PHYTOLOGIST

The sucrose transporter family in Populus: the importance of a tonoplast PtaSUT4 to biomass and carbon partitioning

(2010) Raja S. Payyavula et al.   PLANT JOURNAL

Lignin Biosynthesis and Structure

(2010) R. Vanholme et al.   PLANT PHYSIOLOGY

Evolutionary conservation of the transcriptional network regulating secondary cell wall biosynthesis

(2010) Ruiqin Zhong et al.   TRENDS IN PLANT SCIENCE

TopHat: discovering splice junctions with RNA-Seq

(2009) Cole Trapnell et al.   BIOINFORMATICS

Short-rotation woody crops for bioenergy and biofuels applications

(2009) Maud Hinchee et al.   IN VITRO CELLULAR & DEVELOPMENTAL BIOLOGY-PLANT

Kinesin superfamily motor proteins and intracellular transport

(2009) Nobutaka Hirokawa et al.   NATURE REVIEWS MOLECULAR CELL BIOLOGY

Plant cell wall reconstruction toward improved lignocellulosic production and processability

(2009) Miron Abramson et al.   PLANT SCIENCE

Flowering-time genes modulate meristem determinacy and growth form in Arabidopsis thaliana

(2008) Siegbert Melzer et al.   NATURE GENETICS

Identification of conserved core xylem gene sets: conifer cDNA microarray development, transcript profiling and computational analyses

(2008) Nathalie Pavy et al.   NEW PHYTOLOGIST

A Battery of Transcription Factors Involved in the Regulation of Secondary Cell Wall Biosynthesis in Arabidopsis

(2008) R. Zhong et al.   PLANT CELL

VASCULAR-RELATED NAC-DOMAIN7 is involved in the differentiation of all types of xylem vessels in Arabidopsis roots and shoots

(2008) Masatoshi Yamaguchi et al.   PLANT JOURNAL