A structure-based model fails to probe the mechanical unfolding pathways of the titin I27 domain

From Coarse-Grained to Atomic-Level Characterization of Protein Dynamics: Transition State for the Folding of B Domain of Protein A

(2012) Sebastian Kmiecik et al.   JOURNAL OF PHYSICAL CHEMISTRY B

Universal Relaxation Governs the Nonequilibrium Elasticity of Biomolecules

(2012) Christian Kappel et al.   PHYSICAL REVIEW LETTERS

Velocity scaling for optimizing replica exchange molecular dynamics

(2011) Maksim Kouza et al.   JOURNAL OF CHEMICAL PHYSICS

Biomolecules under mechanical stress: A simple mechanism of complex behavior

(2011) Yohichi Suzuki et al.   JOURNAL OF CHEMICAL PHYSICS

Complex Unfolding Kinetics of Single-Domain Proteins in the Presence of Force

(2010) Michael Schlierf et al.   BIOPHYSICAL JOURNAL

Mechanical Unfolding of Acylphosphatase Studied by Single-Molecule Force Spectroscopy and MD Simulations

(2010) Gali Arad-Haase et al.   BIOPHYSICAL JOURNAL

Direct evidence of the multidimensionality of the free-energy landscapes of proteins revealed by mechanical probes

(2010) Zu Thur Yew et al.   PHYSICAL REVIEW E

Single-Molecule Rupture Dynamics on Multidimensional Landscapes

(2010) Yohichi Suzuki et al.   PHYSICAL REVIEW LETTERS

Changing the Mechanical Unfolding Pathway of FnIII 10 by Tuning the Pulling Strength

(2009) Simon Mitternacht et al.   BIOPHYSICAL JOURNAL

Insights from Coarse-Grained Gō Models for Protein Folding and Dynamics

(2009) Ronald Hills et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Protein mechanical unfolding: Importance of non-native interactions

(2009) Maksim Kouza et al.   JOURNAL OF CHEMICAL PHYSICS

Dependence of protein mechanical unfolding pathways on pulling speeds

(2009) Mai Suan Li et al.   JOURNAL OF CHEMICAL PHYSICS

Biomolecules under mechanical force

(2009) Sanjay Kumar et al.   PHYSICS REPORTS-REVIEW SECTION OF PHYSICS LETTERS

On the remarkable mechanostability of scaffoldins and the mechanical clamp motif

(2009) A. Valbuena et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Improved prediction of protein side-chain conformations with SCWRL4

(2009) Georgii G. Krivov et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

Discovery Through the Computational Microscope

(2009) Eric H. Lee et al.   STRUCTURE

New force replica exchange method and protein folding pathways probed by force-clamp technique

(2008) Maksim Kouza et al.   JOURNAL OF CHEMICAL PHYSICS

New method for deciphering free energy landscape of three-state proteins

(2008) Mai Suan Li et al.   JOURNAL OF CHEMICAL PHYSICS

Free-Energy Landscapes of Proteins in the Presence and Absence of Force

(2008) Zu Thur Yew et al.   JOURNAL OF PHYSICAL CHEMISTRY B

Predicting the order in which contacts are broken during single molecule protein stretching experiments

(2007) Joanna I. Sułkowska et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS