Krylov subspace methods for computing hydrodynamic interactions in Brownian dynamics simulations

Comparison of Brownian dynamics algorithms with hydrodynamic interaction

(2011) Ricardo Rodríguez Schmidt et al.   JOURNAL OF CHEMICAL PHYSICS

Diffusion and association processes in biological systems: theory, computation and experiment

(2011) Paolo Mereghetti et al.   BMC Biophysics

Many-particle Brownian and Langevin Dynamics Simulations with the Brownmove package

(2011) Tihamér Geyer   BMC Biophysics

Absolute Protein-Protein Association Rate Constants from Flexible, Coarse-Grained Brownian Dynamics Simulations: The Role of Intermolecular Hydrodynamic Interactions in Barnase-Barstar Association

(2010) Tamara Frembgen-Kesner et al.   BIOPHYSICAL JOURNAL

Models of macromolecular crowding effects and the need for quantitative comparisons with experiment

(2010) Adrian H Elcock   CURRENT OPINION IN STRUCTURAL BIOLOGY

Crowding and hydrodynamic interactions likely dominate in vivo macromolecular motion

(2010) T. Ando et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Hydrodynamic synchronization of colloidal oscillators

(2010) Jurij Kotar et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

An O(N2) approximation for hydrodynamic interactions in Brownian dynamics simulations

(2009) Tihamér Geyer et al.   JOURNAL OF CHEMICAL PHYSICS

Striking Effects of Hydrodynamic Interactions on the Simulated Diffusion and Folding of Proteins

(2009) Tamara Frembgen-Kesner et al.   Journal of Chemical Theory and Computation