Robustness of atomistic Gō models in predicting native-like folding intermediates

Identification of a Conserved Aggregation-Prone Intermediate State in the Folding Pathways of Spc-SH3 Amyloidogenic Variants

(2012) H. Krobath et al.   JOURNAL OF MOLECULAR BIOLOGY

Cooperativity, Local-Nonlocal Coupling, and Nonnative Interactions: Principles of Protein Folding from Coarse-Grained Models

(2011) Hue Sun Chan et al.   Annual Review of Physical Chemistry

The Energy Computation Paradox and ab initio Protein Folding

(2011) John C. Faver et al.   PLoS One

Taming the complexity of protein folding

(2010) Gregory R Bowman et al.   CURRENT OPINION IN STRUCTURAL BIOLOGY

The protein folding transition state: Insights from kinetics and thermodynamics

(2010) Rui D. M. Travasso et al.   JOURNAL OF CHEMICAL PHYSICS

Topology-based potentials and the study of the competition between protein folding and aggregation

(2009) Lidia Prieto et al.   JOURNAL OF CHEMICAL PHYSICS

An expanding arsenal of experimental methods yields an explosion of insights into protein folding mechanisms

(2009) Alice I Bartlett et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

A simple simulation model can reproduce the thermodynamic folding intermediate of apoflavodoxin

(2009) María Larriva et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

Selection of Optimal Variants of Gō-Like Models of Proteins through Studies of Stretching

(2008) Joanna I. Sułkowska et al.   BIOPHYSICAL JOURNAL

Multiscale methods for macromolecular simulations

(2008) Paul Sherwood et al.   CURRENT OPINION IN STRUCTURAL BIOLOGY

Identifying critical residues in protein folding: Insights from φ-value and P[sub fold] analysis

(2008) P. F. N. Faísca et al.   JOURNAL OF CHEMICAL PHYSICS

Simulations of the protein folding process using topology-based models depend on the experimental structure

(2008) Lidia Prieto et al.   JOURNAL OF CHEMICAL PHYSICS

Protein Folding Pathways Revealed by Essential Dynamics Sampling

(2008) Daniele Narzi et al.   Journal of Chemical Theory and Computation

Topology-based models and NMR structures in protein folding simulations

(2008) M. Fernanda Rey-Stolle et al.   JOURNAL OF COMPUTATIONAL CHEMISTRY

Principal Component Analysis for Protein Folding Dynamics

(2008) Gia G. Maisuradze et al.   JOURNAL OF MOLECULAR BIOLOGY

Tightening of Knots in Proteins

(2008) Joanna I. Sułkowska et al.   PHYSICAL REVIEW LETTERS

Dynameomics: Large-scale assessment of native protein flexibility

(2008) Noah C. Benson et al.   PROTEIN SCIENCE

Coarse-grained models of protein folding: toy models or predictive tools?

(2007) Cecilia Clementi   CURRENT OPINION IN STRUCTURAL BIOLOGY