A derivation of the master equation from path entropy maximization

Markov processes follow from the principle of maximum caliber

(2012) Hao Ge et al.   JOURNAL OF CHEMICAL PHYSICS

Optimal use of data in parallel tempering simulations for the construction of discrete-state Markov models of biomolecular dynamics

(2011) Jan-Hendrik Prinz et al.   JOURNAL OF CHEMICAL PHYSICS

Non-equilibrium steady states: maximization of the Shannon entropy associated with the distribution of dynamical trajectories in the presence of constraints

(2011) Cécile Monthus   JOURNAL OF STATISTICAL MECHANICS-THEORY AND EXPERIMENT

Stochastic theory of nonequilibrium steady states and its applications. Part I

(2011) Xue-Juan Zhang et al.   PHYSICS REPORTS-REVIEW SECTION OF PHYSICS LETTERS

Stochastic theory of nonequilibrium steady states. Part II: Applications in chemical biophysics

(2011) Hao Ge et al.   PHYSICS REPORTS-REVIEW SECTION OF PHYSICS LETTERS

A new formulation of two-time correlation functions of Markov chains applied to gene networks

(2010) Haidong Feng et al.   CHEMICAL PHYSICS LETTERS

Everything you wanted to know about Markov State Models but were afraid to ask

(2010) Vijay S. Pande et al.   METHODS

Maximum Caliber: A variational approach applied to two-state dynamics

(2008) Gerhard Stock et al.   JOURNAL OF CHEMICAL PHYSICS

Generic Schemes for Single-Molecule Kinetics. 1: Self-Consistent Pathway Solutions for Renewal Processes

(2008) Jianshu Cao et al.   JOURNAL OF PHYSICAL CHEMISTRY B