Inferring bulk self-assembly properties from simulations of small systems with multiple constituent species and small systems in the grand canonical ensemble

The effect of topology on the structure and free energy landscape of DNA kissing complexes

(2012) Flavio Romano et al.   JOURNAL OF CHEMICAL PHYSICS

Sequence-dependent thermodynamics of a coarse-grained DNA model

(2012) Petr Šulc et al.   JOURNAL OF CHEMICAL PHYSICS

Langevin dynamics simulation of polymer-assisted virus-like assembly

(2012) J. P. Mahalik et al.   JOURNAL OF CHEMICAL PHYSICS

Lattice model of oligonucleotide hybridization in solution. I. Model and thermodynamics

(2011) Juan C. Araque et al.   JOURNAL OF CHEMICAL PHYSICS

Thermodynamics of DNA hybridization on surfaces

(2011) Terry J. Schmitt et al.   JOURNAL OF CHEMICAL PHYSICS

Moving beyond Watson–Crick models of coarse grained DNA dynamics

(2011) Margaret C. Linak et al.   JOURNAL OF CHEMICAL PHYSICS

Structural, mechanical, and thermodynamic properties of a coarse-grained DNA model

(2011) Thomas E. Ouldridge et al.   JOURNAL OF CHEMICAL PHYSICS

A coarse-grain three-site-per-nucleotide model for DNA with explicit ions

(2011) Gordon S. Freeman et al.   JOURNAL OF CHEMICAL PHYSICS

Effect of Surface Binding on Heterogeneous DNA Melting Equilibria: A Monte Carlo Simulation Study

(2011) John H. Allen et al.   JOURNAL OF PHYSICAL CHEMISTRY B

Direct observation of stepwise movement of a synthetic molecular transporter

(2011) Shelley F. J. Wickham et al.   Nature Nanotechnology

Challenges and opportunities for structural DNA nanotechnology

(2011) Andre V. Pinheiro et al.   Nature Nanotechnology

Templated self-assembly of patchy particles

(2011) Alexander J. Williamson et al.   Soft Matter

Application of a coarse-grained model for DNA to homo- and heterogeneous melting equilibria

(2010) Nicholas B. Tito et al.   CHEMICAL PHYSICS LETTERS

DNA Melting in Small-Molecule−DNA-Hybrid Dimer Structures: Experimental Characterization and Coarse-Grained Molecular Dynamics Simulations

(2010) Tatiana R. Prytkova et al.   JOURNAL OF PHYSICAL CHEMISTRY B

Modelling the self-assembly of virus capsids

(2010) Iain G Johnston et al.   JOURNAL OF PHYSICS-CONDENSED MATTER

Extracting bulk properties of self-assembling systems from small simulations

(2010) Thomas E Ouldridge et al.   JOURNAL OF PHYSICS-CONDENSED MATTER

DNA Nanotweezers Studied with a Coarse-Grained Model of DNA

(2010) Thomas E. Ouldridge et al.   PHYSICAL REVIEW LETTERS

Simulation study of micelle formation by bile salts

(2010) Ana Vila Verde et al.   Soft Matter

Molecular pathways in DNA-DNA hybridization of surface-bound oligonucleotides

(2010) Moritz Julian Hoefert et al.   Soft Matter

A Mesoscale Model of DNA and Its Renaturation

(2009) E.J. Sambriski et al.   BIOPHYSICAL JOURNAL

The self-assembly of DNA Holliday junctions studied with a minimal model

(2009) Thomas E. Ouldridge et al.   JOURNAL OF CHEMICAL PHYSICS

Self-assembly of monodisperse clusters: Dependence on target geometry

(2009) Alex W. Wilber et al.   JOURNAL OF CHEMICAL PHYSICS

Monodisperse self-assembly in a model with protein-like interactions

(2009) Alex W. Wilber et al.   JOURNAL OF CHEMICAL PHYSICS

Phase Diagram of Self-assembled Viral Capsid Protein Polymorphs†

(2009) L. Lavelle et al.   JOURNAL OF PHYSICAL CHEMISTRY B

Phase Diagram of Janus Particles

(2009) Francesco Sciortino et al.   PHYSICAL REVIEW LETTERS

Self-Assembly and Evolution of Homomeric Protein Complexes

(2009) Gabriel Villar et al.   PHYSICAL REVIEW LETTERS

Position dependent mismatch discrimination on DNA microarrays – experiments and model

(2008) Thomas Naiser et al.   BMC BIOINFORMATICS

Sequence effects in the melting and renaturation of short DNA oligonucleotides: structure and mechanistic pathways

(2008) E J Sambriski et al.   JOURNAL OF PHYSICS-CONDENSED MATTER

Hierarchical self-assembly of DNA into symmetric supramolecular polyhedra

(2008) Yu He et al.   NATURE

Role of Reversibility in Viral Capsid Growth: A Paradigm for Self-Assembly

(2008) D. C. Rapaport   PHYSICAL REVIEW LETTERS