Determination of reaction coordinates via locally scaled diffusion map

Extracting Physically Intuitive Reaction Coordinates from Transition Networks of a β-Sheet Miniprotein

(2010) Bo Qi et al.   JOURNAL OF PHYSICAL CHEMISTRY B

Antithrombin Affects Hemostatic Response to Recombinant Activated Factor VII in Factor VIII Deficient Plasma

(2009) Fania Szlam et al.   ANESTHESIA AND ANALGESIA

Topological methods for exploring low-density states in biomolecular folding pathways

(2009) Yuan Yao et al.   JOURNAL OF CHEMICAL PHYSICS

Coordinate-dependent diffusion in protein folding

(2009) R. B. Best et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The rate constant of polymer reversal inside a pore

(2008) Lei Huang et al.   JOURNAL OF CHEMICAL PHYSICS

Diffusion Maps, Reduction Coordinates, and Low Dimensional Representation of Stochastic Systems

(2008) R. R. Coifman et al.   MULTISCALE MODELING & SIMULATION

Manifold parametrizations by eigenfunctions of the Laplacian and heat kernels

(2008) P. W. Jones et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA