Accelerating atomic-level protein simulations by flat-histogram techniques

Monte Carlo Study of the Formation and Conformational Properties of Dimers of Aβ42 Variants

(2011) Simon Mitternacht et al.   JOURNAL OF MOLECULAR BIOLOGY

Hydrophobic Core Formation and Dehydration in Protein Folding Studied by Generalized-Ensemble Simulations

(2010) Takao Yoda et al.   BIOPHYSICAL JOURNAL

Generalized Replica Exchange Method

(2010) Jaegil Kim et al.   JOURNAL OF CHEMICAL PHYSICS

Generalized simulated tempering for exploring strong phase transitions

(2010) Jaegil Kim et al.   JOURNAL OF CHEMICAL PHYSICS

Improving the Wang-Landau algorithm for polymers and proteins

(2010) Adam D. Swetnam et al.   JOURNAL OF COMPUTATIONAL CHEMISTRY

Waltz, an exciting new move in amyloid prediction

(2010) Mikael Oliveberg   NATURE METHODS

Exploring the sequence determinants of amyloid structure using position-specific scoring matrices

(2010) Sebastian Maurer-Stroh et al.   NATURE METHODS

Collapse transitions in a flexible homopolymer chain: Application of the Wang-Landau algorithm

(2010) D. T. Seaton et al.   PHYSICAL REVIEW E

Enhanced Sampling in the Well-Tempered Ensemble

(2010) M. Bonomi et al.   PHYSICAL REVIEW LETTERS

Changing the Mechanical Unfolding Pathway of FnIII 10 by Tuning the Pulling Strength

(2009) Simon Mitternacht et al.   BIOPHYSICAL JOURNAL

Statistical mechanics of aggregation and crystallization for semiflexible polymers

(2009) C. Junghans et al.   EPL

Application of the Wang–Landau algorithm to the dimerization of glycophorin A

(2009) Claire Gervais et al.   JOURNAL OF CHEMICAL PHYSICS

Phase transitions of a single polymer chain: A Wang–Landau simulation study

(2009) Mark P. Taylor et al.   JOURNAL OF CHEMICAL PHYSICS

Thermodynamics of peptide aggregation processes: An analysis from perspectives of three statistical ensembles

(2008) Christoph Junghans et al.   JOURNAL OF CHEMICAL PHYSICS

Optimization of expanded ensemble methods

(2008) Fernando A. Escobedo et al.   JOURNAL OF CHEMICAL PHYSICS

A direct multiple histogram reweighting method for optimal computation of the density of states

(2008) Michael K. Fenwick   JOURNAL OF CHEMICAL PHYSICS

Optimal modification factor and convergence of the Wang-Landau algorithm

(2008) Chenggang Zhou et al.   PHYSICAL REVIEW E

Formation and Growth of Oligomers: A Monte Carlo Study of an Amyloid Tau Fragment

(2008) Da-Wei Li et al.   PLoS Computational Biology

Spontaneous β-barrel formation: An all-atom Monte Carlo study of Aβ16–22 oligomerization

(2007) Anders Irbäck et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS