Monte Carlo simulations of single- and multistep enzyme-catalyzed reaction sequences: Effects of diffusion, cell size, enzyme fluctuations, colocalization, and segregation

Detailed Simulations of Cell Biology with Smoldyn 2.1

(2010) Steven S. Andrews et al.   PLoS Computational Biology

Investigating the robustness of the classical enzyme kinetic equations in small intracellular compartments

(2009) Ramon Grima   BMC Systems Biology

Biochemical simulations: stochastic, approximate stochastic and hybrid approaches

(2009) J. Pahle   BRIEFINGS IN BIOINFORMATICS

Fundamental Aspects of Protein−Protein Association Kinetics

(2009) G. Schreiber et al.   CHEMICAL REVIEWS

Role of conformational dynamics in kinetics of an enzymatic cycle in a nonequilibrium steady state

(2009) Wei Min et al.   JOURNAL OF CHEMICAL PHYSICS

Effect of macromolecular crowding on the rate of diffusion-limited enzymatic reaction

(2009) Manish Agrawal et al.   PRAMANA-JOURNAL OF PHYSICS

Modelling reaction kinetics inside cells

(2008) Ramon Grima et al.   Essays in Biochemistry

Virtual Cell modelling and simulation software environment

(2008) I.I. Moraru et al.   IET Systems Biology

Fast Monte Carlo Simulation Methods for Biological Reaction-Diffusion Systems in Solution and on Surfaces

(2008) Rex A. Kerr et al.   SIAM JOURNAL ON SCIENTIFIC COMPUTING