Analysis of a DNA simulation model through hairpin melting experiments

A systematically coarse-grained model for DNA and its predictions for persistence length, stacking, twist, and chirality

(2010) Alex Morriss-Andrews et al.   JOURNAL OF CHEMICAL PHYSICS

DNA Nanotweezers Studied with a Coarse-Grained Model of DNA

(2010) Thomas E. Ouldridge et al.   PHYSICAL REVIEW LETTERS

Coarse-Grained Brownian Dynamics Simulations of the 10-23 DNAzyme

(2009) Martin Kenward et al.   BIOPHYSICAL JOURNAL

Brownian dynamics simulations of single-stranded DNA hairpins

(2009) Martin Kenward et al.   JOURNAL OF CHEMICAL PHYSICS

The impact of monovalent ion force field model in nucleic acids simulations

(2009) Agnes Noy et al.   PHYSICAL CHEMISTRY CHEMICAL PHYSICS

How stiff is DNA?

(2009) Guohui Zheng et al.   PHYSICAL CHEMISTRY CHEMICAL PHYSICS

Uncovering pathways in DNA oligonucleotide hybridization via transition state analysis

(2009) E. J. Sambriski et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Recent advances in the study of nucleic acid flexibility by molecular dynamics

(2008) Modesto Orozco et al.   CURRENT OPINION IN STRUCTURAL BIOLOGY

The effect of hydrodynamic interactions on the dynamics of DNA translocation through pores

(2008) Aslin Izmitli et al.   JOURNAL OF CHEMICAL PHYSICS