Prediction of RNA multiloop and pseudoknot conformations from a lattice-based, coarse-grain tertiary structure model

The self-assembly of DNA Holliday junctions studied with a minimal model

(2009) Thomas E. Ouldridge et al.   JOURNAL OF CHEMICAL PHYSICS

Predicting structures and stabilities for H-type pseudoknots with interhelix loops

(2009) S. Cao et al.   RNA

Computational RNA Structure Prediction

(2008) Marc Marti-Renom et al.   Current Bioinformatics

Topological Classification of RNA Structures

(2008) Michael Bon et al.   JOURNAL OF MOLECULAR BIOLOGY

Genome wide application of DNA melting analysis

(2008) Daniel Jost et al.   JOURNAL OF PHYSICS-CONDENSED MATTER

Y-DNA melting: a short tale of three scales

(2008) A Dkhissi et al.   JOURNAL OF PHYSICS-CONDENSED MATTER

The MC-Fold and MC-Sym pipeline infers RNA structure from sequence data

(2008) Marc Parisien et al.   NATURE

Impact of Loop Statistics on the Thermodynamics of RNA Folding

(2008) Thomas R. Einert et al.   PHYSICAL REVIEW LETTERS

Structural inference of native and partially folded RNA by high-throughput contact mapping

(2008) R. Das et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Predicting the sizes of large RNA molecules

(2008) A. M. Yoffe et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Ab initio RNA folding by discrete molecular dynamics: From structure prediction to folding mechanisms

(2008) F. Ding et al.   RNA